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BTF3L4 (basic transcription factor 3-like 4)

Identity

Alias_symbol (synonym)MGC23908
Other alias-
HGNC (Hugo) BTF3L4
LocusID (NCBI) 91408
Atlas_Id 60832
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 52521857 and ends at 52556388 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BTF3L4 (1p32.3) / STMN1 (1p36.11)OSBPL9 (1p32.3) / BTF3L4 (1p32.3)TANC1 (2q24.2) / BTF3L4 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTF3L4   30547
Cards
Entrez_Gene (NCBI)BTF3L4  91408  basic transcription factor 3-like 4
Aliases
GeneCards (Weizmann)BTF3L4
Ensembl hg19 (Hinxton)ENSG00000134717 [Gene_View]  chr1:52521857-52556388 [Contig_View]  BTF3L4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134717 [Gene_View]  chr1:52521857-52556388 [Contig_View]  BTF3L4 [Vega]
ICGC DataPortalENSG00000134717
TCGA cBioPortalBTF3L4
AceView (NCBI)BTF3L4
Genatlas (Paris)BTF3L4
WikiGenes91408
SOURCE (Princeton)BTF3L4
Genetics Home Reference (NIH)BTF3L4
Genomic and cartography
GoldenPath hg19 (UCSC)BTF3L4  -     chr1:52521857-52556388 +  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BTF3L4  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblBTF3L4 - 1p32.3 [CytoView hg19]  BTF3L4 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIBTF3L4 [Mapview hg19]  BTF3L4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027582 AK027750 BC021004 BC022371 BC070378
RefSeq transcript (Entrez)NM_001136497 NM_001243767 NM_152265
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)BTF3L4
Cluster EST : UnigeneHs.429839 [ NCBI ]
CGAP (NCI)Hs.429839
Alternative Splicing GalleryENSG00000134717
Gene ExpressionBTF3L4 [ NCBI-GEO ]   BTF3L4 [ EBI - ARRAY_EXPRESS ]   BTF3L4 [ SEEK ]   BTF3L4 [ MEM ]
Gene Expression Viewer (FireBrowse)BTF3L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91408
GTEX Portal (Tissue expression)BTF3L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96K17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96K17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96K17
Splice isoforms : SwissVarQ96K17
PhosPhoSitePlusQ96K17
Domaine pattern : Prosite (Expaxy)NAC_AB (PS51151)   
Domains : Interpro (EBI)Nas_poly-pep-assoc_cplx_dom   
Domain families : Pfam (Sanger)NAC (PF01849)   
Domain families : Pfam (NCBI)pfam01849   
Conserved Domain (NCBI)BTF3L4
DMDM Disease mutations91408
Blocks (Seattle)BTF3L4
SuperfamilyQ96K17
Human Protein AtlasENSG00000134717
Peptide AtlasQ96K17
HPRD17521
IPIIPI00412792   IPI00985015   IPI00982943   IPI00844417   IPI00981665   
Protein Interaction databases
DIP (DOE-UCLA)Q96K17
IntAct (EBI)Q96K17
FunCoupENSG00000134717
BioGRIDBTF3L4
STRING (EMBL)BTF3L4
ZODIACBTF3L4
Ontologies - Pathways
QuickGOQ96K17
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkBTF3L4
Atlas of Cancer Signalling NetworkBTF3L4
Wikipedia pathwaysBTF3L4
Orthology - Evolution
OrthoDB91408
GeneTree (enSembl)ENSG00000134717
Phylogenetic Trees/Animal Genes : TreeFamBTF3L4
HOVERGENQ96K17
HOGENOMQ96K17
Homologs : HomoloGeneBTF3L4
Homology/Alignments : Family Browser (UCSC)BTF3L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTF3L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTF3L4
dbVarBTF3L4
ClinVarBTF3L4
1000_GenomesBTF3L4 
Exome Variant ServerBTF3L4
ExAC (Exome Aggregation Consortium)BTF3L4 (select the gene name)
Genetic variants : HAPMAP91408
Genomic Variants (DGV)BTF3L4 [DGVbeta]
DECIPHER (Syndromes)1:52521857-52556388  ENSG00000134717
CONAN: Copy Number AnalysisBTF3L4 
Mutations
ICGC Data PortalBTF3L4 
TCGA Data PortalBTF3L4 
Broad Tumor PortalBTF3L4
OASIS PortalBTF3L4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTF3L4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTF3L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTF3L4
DgiDB (Drug Gene Interaction Database)BTF3L4
DoCM (Curated mutations)BTF3L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTF3L4 (select a term)
intoGenBTF3L4
Cancer3DBTF3L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBTF3L4
Genetic Testing Registry BTF3L4
NextProtQ96K17 [Medical]
TSGene91408
GENETestsBTF3L4
Huge Navigator BTF3L4 [HugePedia]
snp3D : Map Gene to Disease91408
BioCentury BCIQBTF3L4
ClinGenBTF3L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91408
Chemical/Pharm GKB GenePA142672545
Clinical trialBTF3L4
Miscellaneous
canSAR (ICR)BTF3L4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTF3L4
EVEXBTF3L4
GoPubMedBTF3L4
iHOPBTF3L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:07 CET 2017

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