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BTLA (B and T lymphocyte associated)

Identity

Alias_symbol (synonym)BTLA1
CD272
Other alias
HGNC (Hugo) BTLA
LocusID (NCBI) 151888
Atlas_Id 51441
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112463966 and ends at 112499561 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTLA   21087
Cards
Entrez_Gene (NCBI)BTLA  151888  B and T lymphocyte associated
AliasesBTLA1; CD272
GeneCards (Weizmann)BTLA
Ensembl hg19 (Hinxton)ENSG00000186265 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186265 [Gene_View]  chr3:112463966-112499561 [Contig_View]  BTLA [Vega]
ICGC DataPortalENSG00000186265
TCGA cBioPortalBTLA
AceView (NCBI)BTLA
Genatlas (Paris)BTLA
WikiGenes151888
SOURCE (Princeton)BTLA
Genetics Home Reference (NIH)BTLA
Genomic and cartography
GoldenPath hg38 (UCSC)BTLA  -     chr3:112463966-112499561 -  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTLA  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblBTLA - 3q13.2 [CytoView hg19]  BTLA - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBIBTLA [Mapview hg19]  BTLA [Mapview hg38]
OMIM607925   
Gene and transcription
Genbank (Entrez)AA828425 AI792952 AJ717664 AK131204 AK292692
RefSeq transcript (Entrez)NM_001085357 NM_181780
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTLA
Cluster EST : UnigeneHs.445162 [ NCBI ]
CGAP (NCI)Hs.445162
Alternative Splicing GalleryENSG00000186265
Gene ExpressionBTLA [ NCBI-GEO ]   BTLA [ EBI - ARRAY_EXPRESS ]   BTLA [ SEEK ]   BTLA [ MEM ]
Gene Expression Viewer (FireBrowse)BTLA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151888
GTEX Portal (Tissue expression)BTLA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6A9
Splice isoforms : SwissVarQ7Z6A9
PhosPhoSitePlusQ7Z6A9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Immunoglobulin   
Domain families : Pfam (Sanger)ig (PF00047)   
Domain families : Pfam (NCBI)pfam00047   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)BTLA
DMDM Disease mutations151888
Blocks (Seattle)BTLA
PDB (SRS)2AW2   
PDB (PDBSum)2AW2   
PDB (IMB)2AW2   
PDB (RSDB)2AW2   
Structural Biology KnowledgeBase2AW2   
SCOP (Structural Classification of Proteins)2AW2   
CATH (Classification of proteins structures)2AW2   
SuperfamilyQ7Z6A9
Human Protein AtlasENSG00000186265
Peptide AtlasQ7Z6A9
HPRD06392
IPIIPI00376243   IPI00654867   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6A9
IntAct (EBI)Q7Z6A9
FunCoupENSG00000186265
BioGRIDBTLA
STRING (EMBL)BTLA
ZODIACBTLA
Ontologies - Pathways
QuickGOQ7Z6A9
Ontology : AmiGOadaptive immune response  plasma membrane  integral component of membrane  T cell costimulation  
Ontology : EGO-EBIadaptive immune response  plasma membrane  integral component of membrane  T cell costimulation  
NDEx NetworkBTLA
Atlas of Cancer Signalling NetworkBTLA
Wikipedia pathwaysBTLA
Orthology - Evolution
OrthoDB151888
GeneTree (enSembl)ENSG00000186265
Phylogenetic Trees/Animal Genes : TreeFamBTLA
HOVERGENQ7Z6A9
HOGENOMQ7Z6A9
Homologs : HomoloGeneBTLA
Homology/Alignments : Family Browser (UCSC)BTLA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTLA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTLA
dbVarBTLA
ClinVarBTLA
1000_GenomesBTLA 
Exome Variant ServerBTLA
ExAC (Exome Aggregation Consortium)BTLA (select the gene name)
Genetic variants : HAPMAP151888
Genomic Variants (DGV)BTLA [DGVbeta]
DECIPHERBTLA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTLA 
Mutations
ICGC Data PortalBTLA 
TCGA Data PortalBTLA 
Broad Tumor PortalBTLA
OASIS PortalBTLA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTLA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTLA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTLA
DgiDB (Drug Gene Interaction Database)BTLA
DoCM (Curated mutations)BTLA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTLA (select a term)
intoGenBTLA
Cancer3DBTLA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607925   
Orphanet
MedgenBTLA
Genetic Testing Registry BTLA
NextProtQ7Z6A9 [Medical]
TSGene151888
GENETestsBTLA
Target ValidationBTLA
Huge Navigator BTLA [HugePedia]
snp3D : Map Gene to Disease151888
BioCentury BCIQBTLA
ClinGenBTLA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151888
Chemical/Pharm GKB GenePA134968341
Clinical trialBTLA
Miscellaneous
canSAR (ICR)BTLA (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTLA
EVEXBTLA
GoPubMedBTLA
iHOPBTLA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:59:40 CEST 2017

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