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BTN1A1 (butyrophilin subfamily 1 member A1)

Identity

Alias_namesBTN
butyrophilin
Alias_symbol (synonym)BT
BTN1
Other alias
HGNC (Hugo) BTN1A1
LocusID (NCBI) 696
Atlas_Id 56388
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26501267 and ends at 26510424 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTN1A1   1135
Cards
Entrez_Gene (NCBI)BTN1A1  696  butyrophilin subfamily 1 member A1
AliasesBT; BTN; BTN1
GeneCards (Weizmann)BTN1A1
Ensembl hg19 (Hinxton)ENSG00000124557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124557 [Gene_View]  ENSG00000124557 [Sequence]  chr6:26501267-26510424 [Contig_View]  BTN1A1 [Vega]
ICGC DataPortalENSG00000124557
TCGA cBioPortalBTN1A1
AceView (NCBI)BTN1A1
Genatlas (Paris)BTN1A1
WikiGenes696
SOURCE (Princeton)BTN1A1
Genetics Home Reference (NIH)BTN1A1
Genomic and cartography
GoldenPath hg38 (UCSC)BTN1A1  -     chr6:26501267-26510424 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTN1A1  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblBTN1A1 - 6p22.2 [CytoView hg19]  BTN1A1 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIBTN1A1 [Mapview hg19]  BTN1A1 [Mapview hg38]
OMIM601610   
Gene and transcription
Genbank (Entrez)AA768577 AW977526 BC096312 BC096313 BC096314
RefSeq transcript (Entrez)NM_001732
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTN1A1
Cluster EST : UnigeneHs.153058 [ NCBI ]
CGAP (NCI)Hs.153058
Alternative Splicing GalleryENSG00000124557
Gene ExpressionBTN1A1 [ NCBI-GEO ]   BTN1A1 [ EBI - ARRAY_EXPRESS ]   BTN1A1 [ SEEK ]   BTN1A1 [ MEM ]
Gene Expression Viewer (FireBrowse)BTN1A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)696
GTEX Portal (Tissue expression)BTN1A1
Human Protein AtlasENSG00000124557-BTN1A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13410   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13410  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13410
Splice isoforms : SwissVarQ13410
PhosPhoSitePlusQ13410
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin_SPRY    CD80_C2-set    ConA-like_dom_sf    Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set    PRY    SPRY/PRY_BTN1/2    SPRY_dom   
Domain families : Pfam (Sanger)C2-set_2 (PF08205)    PRY (PF13765)    SPRY (PF00622)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam08205    pfam13765    pfam00622    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)BTN1A1
DMDM Disease mutations696
Blocks (Seattle)BTN1A1
SuperfamilyQ13410
Human Protein Atlas [tissue]ENSG00000124557-BTN1A1 [tissue]
Peptide AtlasQ13410
HPRD03365
IPIIPI00013210   IPI00843976   
Protein Interaction databases
DIP (DOE-UCLA)Q13410
IntAct (EBI)Q13410
FunCoupENSG00000124557
BioGRIDBTN1A1
STRING (EMBL)BTN1A1
ZODIACBTN1A1
Ontologies - Pathways
QuickGOQ13410
Ontology : AmiGOsignaling receptor binding  extracellular space  plasma membrane  integral component of plasma membrane  external side of plasma membrane  signaling receptor activity  regulation of immune response  T cell receptor signaling pathway  
Ontology : EGO-EBIsignaling receptor binding  extracellular space  plasma membrane  integral component of plasma membrane  external side of plasma membrane  signaling receptor activity  regulation of immune response  T cell receptor signaling pathway  
NDEx NetworkBTN1A1
Atlas of Cancer Signalling NetworkBTN1A1
Wikipedia pathwaysBTN1A1
Orthology - Evolution
OrthoDB696
GeneTree (enSembl)ENSG00000124557
Phylogenetic Trees/Animal Genes : TreeFamBTN1A1
HOVERGENQ13410
HOGENOMQ13410
Homologs : HomoloGeneBTN1A1
Homology/Alignments : Family Browser (UCSC)BTN1A1
Gene fusions - Rearrangements
Fusion : QuiverBTN1A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTN1A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTN1A1
dbVarBTN1A1
ClinVarBTN1A1
1000_GenomesBTN1A1 
Exome Variant ServerBTN1A1
ExAC (Exome Aggregation Consortium)ENSG00000124557
GNOMAD BrowserENSG00000124557
Varsome BrowserBTN1A1
Genetic variants : HAPMAP696
Genomic Variants (DGV)BTN1A1 [DGVbeta]
DECIPHERBTN1A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTN1A1 
Mutations
ICGC Data PortalBTN1A1 
TCGA Data PortalBTN1A1 
Broad Tumor PortalBTN1A1
OASIS PortalBTN1A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTN1A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTN1A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTN1A1
DgiDB (Drug Gene Interaction Database)BTN1A1
DoCM (Curated mutations)BTN1A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTN1A1 (select a term)
intoGenBTN1A1
Cancer3DBTN1A1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601610   
Orphanet
DisGeNETBTN1A1
MedgenBTN1A1
Genetic Testing Registry BTN1A1
NextProtQ13410 [Medical]
TSGene696
GENETestsBTN1A1
Target ValidationBTN1A1
Huge Navigator BTN1A1 [HugePedia]
snp3D : Map Gene to Disease696
BioCentury BCIQBTN1A1
ClinGenBTN1A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD696
Chemical/Pharm GKB GenePA25455
Clinical trialBTN1A1
Miscellaneous
canSAR (ICR)BTN1A1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTN1A1
EVEXBTN1A1
GoPubMedBTN1A1
iHOPBTN1A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:54:39 CET 2018

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