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BTN2A3P (butyrophilin subfamily 2 member A3, pseudogene)

Identity

Alias_namesBTN2A3
butyrophilin, subfamily 2, member A3
butyrophilin, subfamily 2, member A3, pseudogene
Alias_symbol (synonym)BTN2.3
Other alias
HGNC (Hugo) BTN2A3P
LocusID (NCBI) 54718
Atlas_Id 60838
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26421411 and ends at 26430588 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTN2A3P (6p22.2) / BTN3A3 (6p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTN2A3P   13229
Cards
Entrez_Gene (NCBI)BTN2A3P  54718  butyrophilin subfamily 2 member A3, pseudogene
AliasesBTN2.3; BTN2A3
GeneCards (Weizmann)BTN2A3P
Ensembl hg19 (Hinxton)ENSG00000124549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124549 [Gene_View]  ENSG00000124549 [Sequence]  chr6:26421411-26430588 [Contig_View]  BTN2A3P [Vega]
ICGC DataPortalENSG00000124549
TCGA cBioPortalBTN2A3P
AceView (NCBI)BTN2A3P
Genatlas (Paris)BTN2A3P
WikiGenes54718
SOURCE (Princeton)BTN2A3P
Genetics Home Reference (NIH)BTN2A3P
Genomic and cartography
GoldenPath hg38 (UCSC)BTN2A3P  -     chr6:26421411-26430588 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTN2A3P  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblBTN2A3P - 6p22.2 [CytoView hg19]  BTN2A3P - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIBTN2A3P [Mapview hg19]  BTN2A3P [Mapview hg38]
OMIM613592   
Gene and transcription
Genbank (Entrez)AK056871 AK292658 BC143636 BC166633 DA706324
RefSeq transcript (Entrez)NM_024018
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTN2A3P
Cluster EST : UnigeneHs.729655 [ NCBI ]
CGAP (NCI)Hs.729655
Alternative Splicing GalleryENSG00000124549
Gene ExpressionBTN2A3P [ NCBI-GEO ]   BTN2A3P [ EBI - ARRAY_EXPRESS ]   BTN2A3P [ SEEK ]   BTN2A3P [ MEM ]
Gene Expression Viewer (FireBrowse)BTN2A3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54718
GTEX Portal (Tissue expression)BTN2A3P
Human Protein AtlasENSG00000124549-BTN2A3P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KV6
Splice isoforms : SwissVarQ96KV6
PhosPhoSitePlusQ96KV6
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    PRY    SPRY_dom   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)BTN2A3P
DMDM Disease mutations54718
Blocks (Seattle)BTN2A3P
SuperfamilyQ96KV6
Human Protein Atlas [tissue]ENSG00000124549-BTN2A3P [tissue]
Peptide AtlasQ96KV6
HPRD12546
IPIIPI00031464   IPI00984515   
Protein Interaction databases
DIP (DOE-UCLA)Q96KV6
IntAct (EBI)Q96KV6
FunCoupENSG00000124549
BioGRIDBTN2A3P
STRING (EMBL)BTN2A3P
ZODIACBTN2A3P
Ontologies - Pathways
QuickGOQ96KV6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkBTN2A3P
Atlas of Cancer Signalling NetworkBTN2A3P
Wikipedia pathwaysBTN2A3P
Orthology - Evolution
OrthoDB54718
GeneTree (enSembl)ENSG00000124549
Phylogenetic Trees/Animal Genes : TreeFamBTN2A3P
HOVERGENQ96KV6
HOGENOMQ96KV6
Homologs : HomoloGeneBTN2A3P
Homology/Alignments : Family Browser (UCSC)BTN2A3P
Gene fusions - Rearrangements
Fusion : QuiverBTN2A3P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTN2A3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTN2A3P
dbVarBTN2A3P
ClinVarBTN2A3P
1000_GenomesBTN2A3P 
Exome Variant ServerBTN2A3P
ExAC (Exome Aggregation Consortium)ENSG00000124549
GNOMAD BrowserENSG00000124549
Varsome BrowserBTN2A3P
Genetic variants : HAPMAP54718
Genomic Variants (DGV)BTN2A3P [DGVbeta]
DECIPHERBTN2A3P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTN2A3P 
Mutations
ICGC Data PortalBTN2A3P 
TCGA Data PortalBTN2A3P 
Broad Tumor PortalBTN2A3P
OASIS PortalBTN2A3P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBTN2A3P
BioMutasearch BTN2A3P
DgiDB (Drug Gene Interaction Database)BTN2A3P
DoCM (Curated mutations)BTN2A3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTN2A3P (select a term)
intoGenBTN2A3P
Cancer3DBTN2A3P(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613592   
Orphanet
DisGeNETBTN2A3P
MedgenBTN2A3P
Genetic Testing Registry BTN2A3P
NextProtQ96KV6 [Medical]
TSGene54718
GENETestsBTN2A3P
Target ValidationBTN2A3P
Huge Navigator BTN2A3P [HugePedia]
snp3D : Map Gene to Disease54718
BioCentury BCIQBTN2A3P
ClinGenBTN2A3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54718
Chemical/Pharm GKB GenePA25458
Clinical trialBTN2A3P
Miscellaneous
canSAR (ICR)BTN2A3P (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTN2A3P
EVEXBTN2A3P
GoPubMedBTN2A3P
iHOPBTN2A3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:37:09 CEST 2018

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