Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BTN3A3 (butyrophilin subfamily 3 member A3)

Identity

Alias_namesbutyrophilin, subfamily 3, member A3
Alias_symbol (synonym)BTF3
BTN3.3
Other alias
HGNC (Hugo) BTN3A3
LocusID (NCBI) 10384
Atlas_Id 60839
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26440472 and ends at 26453415 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTN2A3P (6p22.2) / BTN3A3 (6p22.2)BTN3A1 (6p22.2) / BTN3A3 (6p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTN3A3   1140
Cards
Entrez_Gene (NCBI)BTN3A3  10384  butyrophilin subfamily 3 member A3
AliasesBTF3; BTN3.3
GeneCards (Weizmann)BTN3A3
Ensembl hg19 (Hinxton)ENSG00000111801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111801 [Gene_View]  ENSG00000111801 [Sequence]  chr6:26440472-26453415 [Contig_View]  BTN3A3 [Vega]
ICGC DataPortalENSG00000111801
TCGA cBioPortalBTN3A3
AceView (NCBI)BTN3A3
Genatlas (Paris)BTN3A3
WikiGenes10384
SOURCE (Princeton)BTN3A3
Genetics Home Reference (NIH)BTN3A3
Genomic and cartography
GoldenPath hg38 (UCSC)BTN3A3  -     chr6:26440472-26453415 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTN3A3  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblBTN3A3 - 6p22.2 [CytoView hg19]  BTN3A3 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIBTN3A3 [Mapview hg19]  BTN3A3 [Mapview hg38]
OMIM613595   
Gene and transcription
Genbank (Entrez)AB209581 AK223279 AK223301 AK291722 AK301553
RefSeq transcript (Entrez)NM_001242803 NM_006994 NM_197974
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTN3A3
Cluster EST : UnigeneHs.167741 [ NCBI ]
CGAP (NCI)Hs.167741
Alternative Splicing GalleryENSG00000111801
Gene ExpressionBTN3A3 [ NCBI-GEO ]   BTN3A3 [ EBI - ARRAY_EXPRESS ]   BTN3A3 [ SEEK ]   BTN3A3 [ MEM ]
Gene Expression Viewer (FireBrowse)BTN3A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10384
GTEX Portal (Tissue expression)BTN3A3
Human Protein AtlasENSG00000111801-BTN3A3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00478   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00478  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00478
Splice isoforms : SwissVarO00478
PhosPhoSitePlusO00478
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    PRY    SPRY_dom   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)BTN3A3
DMDM Disease mutations10384
Blocks (Seattle)BTN3A3
PDB (SRS)4F8T   
PDB (PDBSum)4F8T   
PDB (IMB)4F8T   
PDB (RSDB)4F8T   
Structural Biology KnowledgeBase4F8T   
SCOP (Structural Classification of Proteins)4F8T   
CATH (Classification of proteins structures)4F8T   
SuperfamilyO00478
Human Protein Atlas [tissue]ENSG00000111801-BTN3A3 [tissue]
Peptide AtlasO00478
HPRD12548
IPIIPI00012977   IPI00953552   IPI00377135   IPI00947519   IPI00945614   IPI00945279   IPI00946997   IPI00947159   IPI00946114   IPI00945757   IPI00946485   
Protein Interaction databases
DIP (DOE-UCLA)O00478
IntAct (EBI)O00478
FunCoupENSG00000111801
BioGRIDBTN3A3
STRING (EMBL)BTN3A3
ZODIACBTN3A3
Ontologies - Pathways
QuickGOO00478
Ontology : AmiGOT cell mediated immunity  plasma membrane  plasma membrane  membrane  integral component of membrane  
Ontology : EGO-EBIT cell mediated immunity  plasma membrane  plasma membrane  membrane  integral component of membrane  
NDEx NetworkBTN3A3
Atlas of Cancer Signalling NetworkBTN3A3
Wikipedia pathwaysBTN3A3
Orthology - Evolution
OrthoDB10384
GeneTree (enSembl)ENSG00000111801
Phylogenetic Trees/Animal Genes : TreeFamBTN3A3
HOVERGENO00478
HOGENOMO00478
Homologs : HomoloGeneBTN3A3
Homology/Alignments : Family Browser (UCSC)BTN3A3
Gene fusions - Rearrangements
Fusion : QuiverBTN3A3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTN3A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTN3A3
dbVarBTN3A3
ClinVarBTN3A3
1000_GenomesBTN3A3 
Exome Variant ServerBTN3A3
ExAC (Exome Aggregation Consortium)ENSG00000111801
GNOMAD BrowserENSG00000111801
Varsome BrowserBTN3A3
Genetic variants : HAPMAP10384
Genomic Variants (DGV)BTN3A3 [DGVbeta]
DECIPHERBTN3A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTN3A3 
Mutations
ICGC Data PortalBTN3A3 
TCGA Data PortalBTN3A3 
Broad Tumor PortalBTN3A3
OASIS PortalBTN3A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTN3A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTN3A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTN3A3
DgiDB (Drug Gene Interaction Database)BTN3A3
DoCM (Curated mutations)BTN3A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTN3A3 (select a term)
intoGenBTN3A3
Cancer3DBTN3A3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613595   
Orphanet
DisGeNETBTN3A3
MedgenBTN3A3
Genetic Testing Registry BTN3A3
NextProtO00478 [Medical]
TSGene10384
GENETestsBTN3A3
Target ValidationBTN3A3
Huge Navigator BTN3A3 [HugePedia]
snp3D : Map Gene to Disease10384
BioCentury BCIQBTN3A3
ClinGenBTN3A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10384
Chemical/Pharm GKB GenePA25461
Clinical trialBTN3A3
Miscellaneous
canSAR (ICR)BTN3A3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTN3A3
EVEXBTN3A3
GoPubMedBTN3A3
iHOPBTN3A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:37:10 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.