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BTNL2 (butyrophilin like 2)

Identity

Alias_namesbutyrophilin-like 2 (MHC class II associated)
butyrophilin-like 2
Alias_symbol (synonym)HSBLMHC1
BTL-II
BTN7
Other aliasSS2
HGNC (Hugo) BTNL2
LocusID (NCBI) 56244
Atlas_Id 54003
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32393339 and ends at 32407130 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SYT1 (12q21.2) / BTNL2 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTNL2   1142
Cards
Entrez_Gene (NCBI)BTNL2  56244  butyrophilin like 2
AliasesBTL-II; BTN7; HSBLMHC1; SS2
GeneCards (Weizmann)BTNL2
Ensembl hg19 (Hinxton)ENSG00000204290 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204290 [Gene_View]  ENSG00000204290 [Sequence]  chr6:32393339-32407130 [Contig_View]  BTNL2 [Vega]
ICGC DataPortalENSG00000204290
TCGA cBioPortalBTNL2
AceView (NCBI)BTNL2
Genatlas (Paris)BTNL2
WikiGenes56244
SOURCE (Princeton)BTNL2
Genetics Home Reference (NIH)BTNL2
Genomic and cartography
GoldenPath hg38 (UCSC)BTNL2  -     chr6:32393339-32407130 -  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTNL2  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblBTNL2 - 6p21.32 [CytoView hg19]  BTNL2 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIBTNL2 [Mapview hg19]  BTNL2 [Mapview hg38]
OMIM606000   612387   
Gene and transcription
Genbank (Entrez)AY684332 AY684333 BC119668 BC127641 BC127642
RefSeq transcript (Entrez)NM_001304561 NM_019602
RefSeq genomic (Entrez)NC_000006 NG_054759 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NT_187692
Consensus coding sequences : CCDS (NCBI)BTNL2
Cluster EST : UnigeneHs.534471 [ NCBI ]
CGAP (NCI)Hs.534471
Alternative Splicing GalleryENSG00000204290
Gene ExpressionBTNL2 [ NCBI-GEO ]   BTNL2 [ EBI - ARRAY_EXPRESS ]   BTNL2 [ SEEK ]   BTNL2 [ MEM ]
Gene Expression Viewer (FireBrowse)BTNL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56244
GTEX Portal (Tissue expression)BTNL2
Human Protein AtlasENSG00000204290-BTNL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIR0
Splice isoforms : SwissVarQ9UIR0
PhosPhoSitePlusQ9UIR0
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_C1-set    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc1 (SM00407)  IGv (SM00406)  
Conserved Domain (NCBI)BTNL2
DMDM Disease mutations56244
Blocks (Seattle)BTNL2
SuperfamilyQ9UIR0
Human Protein Atlas [tissue]ENSG00000204290-BTNL2 [tissue]
Peptide AtlasQ9UIR0
HPRD12077
IPIIPI00645210   IPI00854680   IPI00854798   IPI00854891   IPI01011927   IPI00982348   IPI01023001   IPI01025637   IPI00854662   IPI01021452   IPI01020884   IPI01021915   IPI00894128   IPI00945444   IPI00945136   IPI00947185   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIR0
IntAct (EBI)Q9UIR0
FunCoupENSG00000204290
BioGRIDBTNL2
STRING (EMBL)BTNL2
ZODIACBTNL2
Ontologies - Pathways
QuickGOQ9UIR0
Ontology : AmiGOsignaling receptor binding  plasma membrane  external side of plasma membrane  integral component of membrane  regulation of immune response  T cell receptor signaling pathway  
Ontology : EGO-EBIsignaling receptor binding  plasma membrane  external side of plasma membrane  integral component of membrane  regulation of immune response  T cell receptor signaling pathway  
NDEx NetworkBTNL2
Atlas of Cancer Signalling NetworkBTNL2
Wikipedia pathwaysBTNL2
Orthology - Evolution
OrthoDB56244
GeneTree (enSembl)ENSG00000204290
Phylogenetic Trees/Animal Genes : TreeFamBTNL2
HOVERGENQ9UIR0
HOGENOMQ9UIR0
Homologs : HomoloGeneBTNL2
Homology/Alignments : Family Browser (UCSC)BTNL2
Gene fusions - Rearrangements
Fusion : QuiverBTNL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTNL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTNL2
dbVarBTNL2
ClinVarBTNL2
1000_GenomesBTNL2 
Exome Variant ServerBTNL2
ExAC (Exome Aggregation Consortium)ENSG00000204290
GNOMAD BrowserENSG00000204290
Varsome BrowserBTNL2
Genetic variants : HAPMAP56244
Genomic Variants (DGV)BTNL2 [DGVbeta]
DECIPHERBTNL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTNL2 
Mutations
ICGC Data PortalBTNL2 
TCGA Data PortalBTNL2 
Broad Tumor PortalBTNL2
OASIS PortalBTNL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTNL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTNL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)TBsLVD Tuberculosis susceptibility Locus Variation Database
BioMutasearch BTNL2
DgiDB (Drug Gene Interaction Database)BTNL2
DoCM (Curated mutations)BTNL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTNL2 (select a term)
intoGenBTNL2
Cancer3DBTNL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606000    612387   
Orphanet735   
DisGeNETBTNL2
MedgenBTNL2
Genetic Testing Registry BTNL2
NextProtQ9UIR0 [Medical]
TSGene56244
GENETestsBTNL2
Target ValidationBTNL2
Huge Navigator BTNL2 [HugePedia]
snp3D : Map Gene to Disease56244
BioCentury BCIQBTNL2
ClinGenBTNL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56244
Chemical/Pharm GKB GenePA25463
Clinical trialBTNL2
Miscellaneous
canSAR (ICR)BTNL2 (select the gene name)
Probes
Litterature
PubMed93 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTNL2
EVEXBTNL2
GoPubMedBTNL2
iHOPBTNL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:54:41 CET 2018

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