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BTNL3 (butyrophilin-like 3)

Identity

Alias_namesbutyrophilin-like 3
Alias_symbol (synonym)BTNLR
BTN9.1
Other alias
HGNC (Hugo) BTNL3
LocusID (NCBI) 10917
Atlas_Id 60841
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 180415845 and ends at 180433727 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BTNL3 (5q35.3) / HLA-C (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTNL3   1143
Cards
Entrez_Gene (NCBI)BTNL3  10917  butyrophilin-like 3
AliasesBTN9.1; BTNLR
GeneCards (Weizmann)BTNL3
Ensembl hg19 (Hinxton)ENSG00000168903 [Gene_View]  chr5:180415845-180433727 [Contig_View]  BTNL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168903 [Gene_View]  chr5:180415845-180433727 [Contig_View]  BTNL3 [Vega]
ICGC DataPortalENSG00000168903
TCGA cBioPortalBTNL3
AceView (NCBI)BTNL3
Genatlas (Paris)BTNL3
WikiGenes10917
SOURCE (Princeton)BTNL3
Genetics Home Reference (NIH)BTNL3
Genomic and cartography
GoldenPath hg19 (UCSC)BTNL3  -     chr5:180415845-180433727 +  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BTNL3  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblBTNL3 - 5q35.3 [CytoView hg19]  BTNL3 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIBTNL3 [Mapview hg19]  BTNL3 [Mapview hg38]
OMIM606192   
Gene and transcription
Genbank (Entrez)AB020625 AK025267 AY358385 BC100800 BC100801
RefSeq transcript (Entrez)NM_006707 NM_197975
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)BTNL3
Cluster EST : UnigeneHs.225949 [ NCBI ]
CGAP (NCI)Hs.225949
Alternative Splicing GalleryENSG00000168903
Gene ExpressionBTNL3 [ NCBI-GEO ]   BTNL3 [ EBI - ARRAY_EXPRESS ]   BTNL3 [ SEEK ]   BTNL3 [ MEM ]
Gene Expression Viewer (FireBrowse)BTNL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10917
GTEX Portal (Tissue expression)BTNL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXE8
Splice isoforms : SwissVarQ6UXE8
PhosPhoSitePlusQ6UXE8
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    PRY    SPRY_dom   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)BTNL3
DMDM Disease mutations10917
Blocks (Seattle)BTNL3
SuperfamilyQ6UXE8
Human Protein AtlasENSG00000168903
Peptide AtlasQ6UXE8
HPRD08393
IPIIPI00419727   IPI00009151   IPI00953622   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXE8
IntAct (EBI)Q6UXE8
FunCoupENSG00000168903
BioGRIDBTNL3
STRING (EMBL)BTNL3
ZODIACBTNL3
Ontologies - Pathways
QuickGOQ6UXE8
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  
NDEx NetworkBTNL3
Atlas of Cancer Signalling NetworkBTNL3
Wikipedia pathwaysBTNL3
Orthology - Evolution
OrthoDB10917
GeneTree (enSembl)ENSG00000168903
Phylogenetic Trees/Animal Genes : TreeFamBTNL3
HOVERGENQ6UXE8
HOGENOMQ6UXE8
Homologs : HomoloGeneBTNL3
Homology/Alignments : Family Browser (UCSC)BTNL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTNL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTNL3
dbVarBTNL3
ClinVarBTNL3
1000_GenomesBTNL3 
Exome Variant ServerBTNL3
ExAC (Exome Aggregation Consortium)BTNL3 (select the gene name)
Genetic variants : HAPMAP10917
Genomic Variants (DGV)BTNL3 [DGVbeta]
DECIPHER (Syndromes)5:180415845-180433727  ENSG00000168903
CONAN: Copy Number AnalysisBTNL3 
Mutations
ICGC Data PortalBTNL3 
TCGA Data PortalBTNL3 
Broad Tumor PortalBTNL3
OASIS PortalBTNL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTNL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTNL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTNL3
DgiDB (Drug Gene Interaction Database)BTNL3
DoCM (Curated mutations)BTNL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTNL3 (select a term)
intoGenBTNL3
Cancer3DBTNL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606192   
Orphanet
MedgenBTNL3
Genetic Testing Registry BTNL3
NextProtQ6UXE8 [Medical]
TSGene10917
GENETestsBTNL3
Huge Navigator BTNL3 [HugePedia]
snp3D : Map Gene to Disease10917
BioCentury BCIQBTNL3
ClinGenBTNL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10917
Chemical/Pharm GKB GenePA25464
Clinical trialBTNL3
Miscellaneous
canSAR (ICR)BTNL3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTNL3
EVEXBTNL3
GoPubMedBTNL3
iHOPBTNL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:09 CET 2017

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