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BTNL8 (butyrophilin like 8)

Identity

Alias_namesbutyrophilin-like 8
Alias_symbol (synonym)FLJ21458
BTN9.2
Other alias
HGNC (Hugo) BTNL8
LocusID (NCBI) 79908
Atlas_Id 60842
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 180899077 and ends at 180950906 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTNL8   26131
Cards
Entrez_Gene (NCBI)BTNL8  79908  butyrophilin like 8
AliasesBTN9.2
GeneCards (Weizmann)BTNL8
Ensembl hg19 (Hinxton)ENSG00000113303 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113303 [Gene_View]  chr5:180899077-180950906 [Contig_View]  BTNL8 [Vega]
ICGC DataPortalENSG00000113303
TCGA cBioPortalBTNL8
AceView (NCBI)BTNL8
Genatlas (Paris)BTNL8
WikiGenes79908
SOURCE (Princeton)BTNL8
Genetics Home Reference (NIH)BTNL8
Genomic and cartography
GoldenPath hg38 (UCSC)BTNL8  -     chr5:180899077-180950906 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTNL8  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblBTNL8 - 5q35.3 [CytoView hg19]  BTNL8 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIBTNL8 [Mapview hg19]  BTNL8 [Mapview hg38]
OMIM615606   
Gene and transcription
Genbank (Entrez)AK025111 AK225213 AK296597 AK298687 AK308012
RefSeq transcript (Entrez)NM_001040462 NM_001159707 NM_001159708 NM_001159709 NM_001159710 NM_024850
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTNL8
Cluster EST : UnigeneHs.189109 [ NCBI ]
CGAP (NCI)Hs.189109
Alternative Splicing GalleryENSG00000113303
Gene ExpressionBTNL8 [ NCBI-GEO ]   BTNL8 [ EBI - ARRAY_EXPRESS ]   BTNL8 [ SEEK ]   BTNL8 [ MEM ]
Gene Expression Viewer (FireBrowse)BTNL8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79908
GTEX Portal (Tissue expression)BTNL8
Human Protein AtlasENSG00000113303-BTNL8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX41   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX41  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX41
Splice isoforms : SwissVarQ6UX41
PhosPhoSitePlusQ6UX41
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    PRY    SPRY_dom   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)BTNL8
DMDM Disease mutations79908
Blocks (Seattle)BTNL8
SuperfamilyQ6UX41
Human Protein Atlas [tissue]ENSG00000113303-BTNL8 [tissue]
Peptide AtlasQ6UX41
HPRD12549
IPIIPI00432378   IPI00930083   IPI00016321   IPI00930350   IPI00930305   IPI00884126   IPI00921449   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX41
IntAct (EBI)Q6UX41
FunCoupENSG00000113303
BioGRIDBTNL8
STRING (EMBL)BTNL8
ZODIACBTNL8
Ontologies - Pathways
QuickGOQ6UX41
Ontology : AmiGOadaptive immune response  protein binding  plasma membrane  integral component of membrane  
Ontology : EGO-EBIadaptive immune response  protein binding  plasma membrane  integral component of membrane  
NDEx NetworkBTNL8
Atlas of Cancer Signalling NetworkBTNL8
Wikipedia pathwaysBTNL8
Orthology - Evolution
OrthoDB79908
GeneTree (enSembl)ENSG00000113303
Phylogenetic Trees/Animal Genes : TreeFamBTNL8
HOVERGENQ6UX41
HOGENOMQ6UX41
Homologs : HomoloGeneBTNL8
Homology/Alignments : Family Browser (UCSC)BTNL8
Gene fusions - Rearrangements
Tumor Fusion PortalBTNL8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTNL8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTNL8
dbVarBTNL8
ClinVarBTNL8
1000_GenomesBTNL8 
Exome Variant ServerBTNL8
ExAC (Exome Aggregation Consortium)ENSG00000113303
GNOMAD BrowserENSG00000113303
Genetic variants : HAPMAP79908
Genomic Variants (DGV)BTNL8 [DGVbeta]
DECIPHERBTNL8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTNL8 
Mutations
ICGC Data PortalBTNL8 
TCGA Data PortalBTNL8 
Broad Tumor PortalBTNL8
OASIS PortalBTNL8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTNL8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTNL8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTNL8
DgiDB (Drug Gene Interaction Database)BTNL8
DoCM (Curated mutations)BTNL8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTNL8 (select a term)
intoGenBTNL8
Cancer3DBTNL8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615606   
Orphanet
DisGeNETBTNL8
MedgenBTNL8
Genetic Testing Registry BTNL8
NextProtQ6UX41 [Medical]
TSGene79908
GENETestsBTNL8
Target ValidationBTNL8
Huge Navigator BTNL8 [HugePedia]
snp3D : Map Gene to Disease79908
BioCentury BCIQBTNL8
ClinGenBTNL8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79908
Chemical/Pharm GKB GenePA134918466
Clinical trialBTNL8
Miscellaneous
canSAR (ICR)BTNL8 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTNL8
EVEXBTNL8
GoPubMedBTNL8
iHOPBTNL8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:11:25 CET 2017

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