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BTNL9 (butyrophilin like 9)

Identity

Alias_namesbutyrophilin-like 9
Alias_symbol (synonym)FLJ32535
BTN8
Other aliasBTN3
VDLS1900
HGNC (Hugo) BTNL9
LocusID (NCBI) 153579
Atlas_Id 60843
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 181040225 and ends at 181057169 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTNL9 (5q35.3) / LSM14B (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BTNL9   24176
Cards
Entrez_Gene (NCBI)BTNL9  153579  butyrophilin like 9
AliasesBTN3; BTN8; VDLS1900
GeneCards (Weizmann)BTNL9
Ensembl hg19 (Hinxton)ENSG00000165810 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165810 [Gene_View]  chr5:181040225-181057169 [Contig_View]  BTNL9 [Vega]
ICGC DataPortalENSG00000165810
TCGA cBioPortalBTNL9
AceView (NCBI)BTNL9
Genatlas (Paris)BTNL9
WikiGenes153579
SOURCE (Princeton)BTNL9
Genetics Home Reference (NIH)BTNL9
Genomic and cartography
GoldenPath hg38 (UCSC)BTNL9  -     chr5:181040225-181057169 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BTNL9  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblBTNL9 - 5q35.3 [CytoView hg19]  BTNL9 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIBTNL9 [Mapview hg19]  BTNL9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057097 AK298113 AK309516 AL833663 AY358358
RefSeq transcript (Entrez)NM_001308245 NM_152547
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BTNL9
Cluster EST : UnigeneHs.546502 [ NCBI ]
CGAP (NCI)Hs.546502
Alternative Splicing GalleryENSG00000165810
Gene ExpressionBTNL9 [ NCBI-GEO ]   BTNL9 [ EBI - ARRAY_EXPRESS ]   BTNL9 [ SEEK ]   BTNL9 [ MEM ]
Gene Expression Viewer (FireBrowse)BTNL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153579
GTEX Portal (Tissue expression)BTNL9
Human Protein AtlasENSG00000165810-BTNL9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXG8
Splice isoforms : SwissVarQ6UXG8
PhosPhoSitePlusQ6UXG8
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    PRY    SPRY_dom   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)BTNL9
DMDM Disease mutations153579
Blocks (Seattle)BTNL9
SuperfamilyQ6UXG8
Human Protein Atlas [tissue]ENSG00000165810-BTNL9 [tissue]
Peptide AtlasQ6UXG8
HPRD12550
IPIIPI00873168   IPI00060989   IPI00441068   IPI00166469   IPI00966706   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXG8
IntAct (EBI)Q6UXG8
FunCoupENSG00000165810
BioGRIDBTNL9
STRING (EMBL)BTNL9
ZODIACBTNL9
Ontologies - Pathways
QuickGOQ6UXG8
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkBTNL9
Atlas of Cancer Signalling NetworkBTNL9
Wikipedia pathwaysBTNL9
Orthology - Evolution
OrthoDB153579
GeneTree (enSembl)ENSG00000165810
Phylogenetic Trees/Animal Genes : TreeFamBTNL9
HOVERGENQ6UXG8
HOGENOMQ6UXG8
Homologs : HomoloGeneBTNL9
Homology/Alignments : Family Browser (UCSC)BTNL9
Gene fusions - Rearrangements
Fusion: Tumor Portal BTNL9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBTNL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BTNL9
dbVarBTNL9
ClinVarBTNL9
1000_GenomesBTNL9 
Exome Variant ServerBTNL9
ExAC (Exome Aggregation Consortium)ENSG00000165810
GNOMAD BrowserENSG00000165810
Genetic variants : HAPMAP153579
Genomic Variants (DGV)BTNL9 [DGVbeta]
DECIPHERBTNL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBTNL9 
Mutations
ICGC Data PortalBTNL9 
TCGA Data PortalBTNL9 
Broad Tumor PortalBTNL9
OASIS PortalBTNL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBTNL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBTNL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BTNL9
DgiDB (Drug Gene Interaction Database)BTNL9
DoCM (Curated mutations)BTNL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BTNL9 (select a term)
intoGenBTNL9
Cancer3DBTNL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBTNL9
Genetic Testing Registry BTNL9
NextProtQ6UXG8 [Medical]
TSGene153579
GENETestsBTNL9
Target ValidationBTNL9
Huge Navigator BTNL9 [HugePedia]
snp3D : Map Gene to Disease153579
BioCentury BCIQBTNL9
ClinGenBTNL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153579
Chemical/Pharm GKB GenePA134945306
Clinical trialBTNL9
Miscellaneous
canSAR (ICR)BTNL9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBTNL9
EVEXBTNL9
GoPubMedBTNL9
iHOPBTNL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:39:23 CET 2017

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