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BUD13 (BUD13 homolog)

Identity

Alias_namesBUD13 homolog (yeast)
BUD13 homolog (S. cerevisiae)
Alias_symbol (synonym)MGC13125
fSAP71
Cwc26
Other alias
HGNC (Hugo) BUD13
LocusID (NCBI) 84811
Atlas_Id 54160
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 116618886 and ends at 116643714 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BUD13 (11q23.3) / APOA5 (11q23.3)KMT2A (11q23.3) / BUD13 (11q23.3)BUD13 11q23.3 / APOA5 11q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BUD13   28199
Cards
Entrez_Gene (NCBI)BUD13  84811  BUD13 homolog
AliasesCwc26; fSAP71
GeneCards (Weizmann)BUD13
Ensembl hg19 (Hinxton)ENSG00000137656 [Gene_View]  chr11:116618886-116643714 [Contig_View]  BUD13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137656 [Gene_View]  chr11:116618886-116643714 [Contig_View]  BUD13 [Vega]
ICGC DataPortalENSG00000137656
TCGA cBioPortalBUD13
AceView (NCBI)BUD13
Genatlas (Paris)BUD13
WikiGenes84811
SOURCE (Princeton)BUD13
Genetics Home Reference (NIH)BUD13
Genomic and cartography
GoldenPath hg19 (UCSC)BUD13  -     chr11:116618886-116643714 -  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BUD13  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblBUD13 - 11q23.3 [CytoView hg19]  BUD13 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIBUD13 [Mapview hg19]  BUD13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057832 AK130600 AK225164 AK289635 AK291111
RefSeq transcript (Entrez)NM_001159736 NM_032725
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)BUD13
Cluster EST : UnigeneHs.437341 [ NCBI ]
CGAP (NCI)Hs.437341
Alternative Splicing GalleryENSG00000137656
Gene ExpressionBUD13 [ NCBI-GEO ]   BUD13 [ EBI - ARRAY_EXPRESS ]   BUD13 [ SEEK ]   BUD13 [ MEM ]
Gene Expression Viewer (FireBrowse)BUD13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84811
GTEX Portal (Tissue expression)BUD13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRD0
Splice isoforms : SwissVarQ9BRD0
PhosPhoSitePlusQ9BRD0
Domains : Interpro (EBI)Bud13   
Domain families : Pfam (Sanger)Bud13 (PF09736)   
Domain families : Pfam (NCBI)pfam09736   
Conserved Domain (NCBI)BUD13
DMDM Disease mutations84811
Blocks (Seattle)BUD13
SuperfamilyQ9BRD0
Human Protein AtlasENSG00000137656
Peptide AtlasQ9BRD0
HPRD11307
IPIIPI00013743   IPI00387050   IPI00893291   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRD0
IntAct (EBI)Q9BRD0
FunCoupENSG00000137656
BioGRIDBUD13
STRING (EMBL)BUD13
ZODIACBUD13
Ontologies - Pathways
QuickGOQ9BRD0
Ontology : AmiGOmRNA splicing, via spliceosome  protein binding  nucleus  mRNA export from nucleus  poly(A) RNA binding  RES complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  protein binding  nucleus  mRNA export from nucleus  poly(A) RNA binding  RES complex  
NDEx NetworkBUD13
Atlas of Cancer Signalling NetworkBUD13
Wikipedia pathwaysBUD13
Orthology - Evolution
OrthoDB84811
GeneTree (enSembl)ENSG00000137656
Phylogenetic Trees/Animal Genes : TreeFamBUD13
HOVERGENQ9BRD0
HOGENOMQ9BRD0
Homologs : HomoloGeneBUD13
Homology/Alignments : Family Browser (UCSC)BUD13
Gene fusions - Rearrangements
Fusion : MitelmanBUD13/APOA5 [11q23.3/11q23.3]  
Fusion: TCGABUD13 11q23.3 APOA5 11q23.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBUD13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BUD13
dbVarBUD13
ClinVarBUD13
1000_GenomesBUD13 
Exome Variant ServerBUD13
ExAC (Exome Aggregation Consortium)BUD13 (select the gene name)
Genetic variants : HAPMAP84811
Genomic Variants (DGV)BUD13 [DGVbeta]
DECIPHER (Syndromes)11:116618886-116643714  ENSG00000137656
CONAN: Copy Number AnalysisBUD13 
Mutations
ICGC Data PortalBUD13 
TCGA Data PortalBUD13 
Broad Tumor PortalBUD13
OASIS PortalBUD13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBUD13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBUD13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BUD13
DgiDB (Drug Gene Interaction Database)BUD13
DoCM (Curated mutations)BUD13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BUD13 (select a term)
intoGenBUD13
Cancer3DBUD13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBUD13
Genetic Testing Registry BUD13
NextProtQ9BRD0 [Medical]
TSGene84811
GENETestsBUD13
Huge Navigator BUD13 [HugePedia]
snp3D : Map Gene to Disease84811
BioCentury BCIQBUD13
ClinGenBUD13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84811
Chemical/Pharm GKB GenePA144596512
Clinical trialBUD13
Miscellaneous
canSAR (ICR)BUD13 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBUD13
EVEXBUD13
GoPubMedBUD13
iHOPBUD13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:21 CEST 2017

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