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BUD23 (BUD23, rRNA methyltransferase and ribosome maturation factor)

Identity

Other aliasHASJ4442
HUSSY-3
MERM1
PP3381
WBMT
WBSCR22
HGNC (Hugo) BUD23
LocusID (NCBI) 114049
Atlas_Id 56847
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73683568 and ends at 73698221 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BUD23   16405
Cards
Entrez_Gene (NCBI)BUD23  114049  BUD23, rRNA methyltransferase and ribosome maturation factor
AliasesHASJ4442; HUSSY-3; MERM1; PP3381; 
WBMT; WBSCR22
GeneCards (Weizmann)BUD23
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:73683568-73698221 [Contig_View]  BUD23 [Vega]
TCGA cBioPortalBUD23
AceView (NCBI)BUD23
Genatlas (Paris)BUD23
WikiGenes114049
SOURCE (Princeton)BUD23
Genetics Home Reference (NIH)BUD23
Genomic and cartography
GoldenPath hg38 (UCSC)BUD23  -     chr7:73683568-73698221 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BUD23  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblBUD23 - 7q11.23 [CytoView hg19]  BUD23 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIBUD23 [Mapview hg19]  BUD23 [Mapview hg38]
OMIM615733   
Gene and transcription
Genbank (Entrez)AA099700 AA508840 AF218007 AF412034 AF420248
RefSeq transcript (Entrez)NM_001202560 NM_017528
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BUD23
Cluster EST : UnigeneHs.647063 [ NCBI ]
CGAP (NCI)Hs.647063
Gene ExpressionBUD23 [ NCBI-GEO ]   BUD23 [ EBI - ARRAY_EXPRESS ]   BUD23 [ SEEK ]   BUD23 [ MEM ]
Gene Expression Viewer (FireBrowse)BUD23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114049
GTEX Portal (Tissue expression)BUD23
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43709   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43709  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43709
Splice isoforms : SwissVarO43709
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusO43709
Domains : Interpro (EBI)Methyltransf_11    SAM-dependent_MTases    Unchr_MeTrfase_Williams-Beuren   
Domain families : Pfam (Sanger)Methyltransf_11 (PF08241)    WBS_methylT (PF12589)   
Domain families : Pfam (NCBI)pfam08241    pfam12589   
Conserved Domain (NCBI)BUD23
DMDM Disease mutations114049
Blocks (Seattle)BUD23
SuperfamilyO43709
Peptide AtlasO43709
IPIIPI00013810   IPI00456055   IPI00902993   IPI00910635   IPI00927642   IPI00925119   IPI00924769   IPI00926136   IPI00925314   IPI00927183   
Protein Interaction databases
DIP (DOE-UCLA)O43709
IntAct (EBI)O43709
BioGRIDBUD23
STRING (EMBL)BUD23
ZODIACBUD23
Ontologies - Pathways
QuickGOO43709
Ontology : AmiGORNA binding  cellular_component  nucleus  nucleoplasm  nucleolus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  methyltransferase activity  rRNA (guanine) methyltransferase activity  covalent chromatin modification  rRNA methylation  rRNA (guanine-N7)-methylation  
Ontology : EGO-EBIRNA binding  cellular_component  nucleus  nucleoplasm  nucleolus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  methyltransferase activity  rRNA (guanine) methyltransferase activity  covalent chromatin modification  rRNA methylation  rRNA (guanine-N7)-methylation  
Pathways : KEGGHistidine metabolism    Tyrosine metabolism   
NDEx NetworkBUD23
Atlas of Cancer Signalling NetworkBUD23
Wikipedia pathwaysBUD23
Orthology - Evolution
OrthoDB114049
Phylogenetic Trees/Animal Genes : TreeFamBUD23
HOVERGENO43709
HOGENOMO43709
Homologs : HomoloGeneBUD23
Homology/Alignments : Family Browser (UCSC)BUD23
Gene fusions - Rearrangements
Fusion: Tumor Portal BUD23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBUD23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BUD23
dbVarBUD23
ClinVarBUD23
1000_GenomesBUD23 
Exome Variant ServerBUD23
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP114049
Genomic Variants (DGV)BUD23 [DGVbeta]
DECIPHERBUD23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBUD23 
Mutations
ICGC Data PortalBUD23 
TCGA Data PortalBUD23 
Broad Tumor PortalBUD23
OASIS PortalBUD23 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBUD23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BUD23
DgiDB (Drug Gene Interaction Database)BUD23
DoCM (Curated mutations)BUD23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BUD23 (select a term)
intoGenBUD23
Cancer3DBUD23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615733   
Orphanet
MedgenBUD23
Genetic Testing Registry BUD23
NextProtO43709 [Medical]
TSGene114049
GENETestsBUD23
Target ValidationBUD23
Huge Navigator BUD23 [HugePedia]
snp3D : Map Gene to Disease114049
BioCentury BCIQBUD23
ClinGenBUD23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114049
Chemical/Pharm GKB GenePA38133
Clinical trialBUD23
Miscellaneous
canSAR (ICR)BUD23 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBUD23
EVEXBUD23
GoPubMedBUD23
iHOPBUD23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:42:23 CET 2017

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