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BUD31 (BUD31 homolog)

Identity

Alias_namesBUD31 homolog (yeast)
BUD31 homolog (S. cerevisiae)
Alias_symbol (synonym)YCR063W
EDG-2
EDG2
G10
fSAP17
Cwc14
Other alias
HGNC (Hugo) BUD31
LocusID (NCBI) 8896
Atlas_Id 50213
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99006601 and ends at 99017239 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BUD31 (7q22.1) / AGAP2 (12q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BUD31   29629
Cards
Entrez_Gene (NCBI)BUD31  8896  BUD31 homolog
AliasesCwc14; EDG-2; EDG2; G10; 
YCR063W; fSAP17
GeneCards (Weizmann)BUD31
Ensembl hg19 (Hinxton)ENSG00000106245 [Gene_View]  chr7:99006601-99017239 [Contig_View]  BUD31 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106245 [Gene_View]  chr7:99006601-99017239 [Contig_View]  BUD31 [Vega]
ICGC DataPortalENSG00000106245
TCGA cBioPortalBUD31
AceView (NCBI)BUD31
Genatlas (Paris)BUD31
WikiGenes8896
SOURCE (Princeton)BUD31
Genetics Home Reference (NIH)BUD31
Genomic and cartography
GoldenPath hg19 (UCSC)BUD31  -     chr7:99006601-99017239 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BUD31  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblBUD31 - 7q22.1 [CytoView hg19]  BUD31 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIBUD31 [Mapview hg19]  BUD31 [Mapview hg38]
OMIM603477   
Gene and transcription
Genbank (Entrez)AK297784 AK316477 BC022821 BC104670 CR456951
RefSeq transcript (Entrez)NM_003910
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)BUD31
Cluster EST : UnigeneHs.380233 [ NCBI ]
CGAP (NCI)Hs.380233
Alternative Splicing GalleryENSG00000106245
Gene ExpressionBUD31 [ NCBI-GEO ]   BUD31 [ EBI - ARRAY_EXPRESS ]   BUD31 [ SEEK ]   BUD31 [ MEM ]
Gene Expression Viewer (FireBrowse)BUD31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8896
GTEX Portal (Tissue expression)BUD31
Protein : pattern, domain, 3D structure
UniProt/SwissProtP41223   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP41223  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP41223
Splice isoforms : SwissVarP41223
PhosPhoSitePlusP41223
Domaine pattern : Prosite (Expaxy)G10_1 (PS00997)    G10_2 (PS00998)   
Domains : Interpro (EBI)BUD31/G10-rel_CS    G10   
Domain families : Pfam (Sanger)G10 (PF01125)   
Domain families : Pfam (NCBI)pfam01125   
Conserved Domain (NCBI)BUD31
DMDM Disease mutations8896
Blocks (Seattle)BUD31
PDB (SRS)4OED    4OH6    4OKB   
PDB (PDBSum)4OED    4OH6    4OKB   
PDB (IMB)4OED    4OH6    4OKB   
PDB (RSDB)4OED    4OH6    4OKB   
Structural Biology KnowledgeBase4OED    4OH6    4OKB   
SCOP (Structural Classification of Proteins)4OED    4OH6    4OKB   
CATH (Classification of proteins structures)4OED    4OH6    4OKB   
SuperfamilyP41223
Human Protein AtlasENSG00000106245
Peptide AtlasP41223
HPRD10351
IPIIPI00013180   IPI00925053   IPI00925240   IPI00925500   
Protein Interaction databases
DIP (DOE-UCLA)P41223
IntAct (EBI)P41223
FunCoupENSG00000106245
BioGRIDBUD31
STRING (EMBL)BUD31
ZODIACBUD31
Ontologies - Pathways
QuickGOP41223
Ontology : AmiGOmRNA splicing, via spliceosome  nuclear chromatin  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  spliceosomal complex  regulation of transcription from RNA polymerase II promoter  ligand-dependent nuclear receptor transcription coactivator activity  nuclear hormone receptor binding  positive regulation of androgen receptor activity  
Ontology : EGO-EBImRNA splicing, via spliceosome  nuclear chromatin  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  spliceosomal complex  regulation of transcription from RNA polymerase II promoter  ligand-dependent nuclear receptor transcription coactivator activity  nuclear hormone receptor binding  positive regulation of androgen receptor activity  
Pathways : KEGGSpliceosome   
NDEx NetworkBUD31
Atlas of Cancer Signalling NetworkBUD31
Wikipedia pathwaysBUD31
Orthology - Evolution
OrthoDB8896
GeneTree (enSembl)ENSG00000106245
Phylogenetic Trees/Animal Genes : TreeFamBUD31
HOVERGENP41223
HOGENOMP41223
Homologs : HomoloGeneBUD31
Homology/Alignments : Family Browser (UCSC)BUD31
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBUD31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BUD31
dbVarBUD31
ClinVarBUD31
1000_GenomesBUD31 
Exome Variant ServerBUD31
ExAC (Exome Aggregation Consortium)BUD31 (select the gene name)
Genetic variants : HAPMAP8896
Genomic Variants (DGV)BUD31 [DGVbeta]
DECIPHER (Syndromes)7:99006601-99017239  ENSG00000106245
CONAN: Copy Number AnalysisBUD31 
Mutations
ICGC Data PortalBUD31 
TCGA Data PortalBUD31 
Broad Tumor PortalBUD31
OASIS PortalBUD31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBUD31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBUD31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BUD31
DgiDB (Drug Gene Interaction Database)BUD31
DoCM (Curated mutations)BUD31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BUD31 (select a term)
intoGenBUD31
Cancer3DBUD31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603477   
Orphanet
MedgenBUD31
Genetic Testing Registry BUD31
NextProtP41223 [Medical]
TSGene8896
GENETestsBUD31
Huge Navigator BUD31 [HugePedia]
snp3D : Map Gene to Disease8896
BioCentury BCIQBUD31
ClinGenBUD31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8896
Chemical/Pharm GKB GenePA144596513
Clinical trialBUD31
Miscellaneous
canSAR (ICR)BUD31 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBUD31
EVEXBUD31
GoPubMedBUD31
iHOPBUD31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:57:58 CET 2017

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