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C10orf10 (chromosome 10 open reading frame 10)

Identity

Alias_symbol (synonym)DEPP
FIG
Fseg
Other alias
HGNC (Hugo) C10orf10
LocusID (NCBI) 11067
Atlas_Id 55079
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 45471709 and ends at 45474330 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C10orf10 (10q11.21) / ROS1 (6q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf10   23355
Cards
Entrez_Gene (NCBI)C10orf10  11067  chromosome 10 open reading frame 10
AliasesDEPP; FIG; Fseg
GeneCards (Weizmann)C10orf10
Ensembl hg19 (Hinxton)ENSG00000165507 [Gene_View]  chr10:45471709-45474330 [Contig_View]  C10orf10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165507 [Gene_View]  chr10:45471709-45474330 [Contig_View]  C10orf10 [Vega]
ICGC DataPortalENSG00000165507
TCGA cBioPortalC10orf10
AceView (NCBI)C10orf10
Genatlas (Paris)C10orf10
WikiGenes11067
SOURCE (Princeton)C10orf10
Genetics Home Reference (NIH)C10orf10
Genomic and cartography
GoldenPath hg19 (UCSC)C10orf10  -     chr10:45471709-45474330 -  10q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C10orf10  -     10q11.21   [Description]    (hg38-Dec_2013)
EnsemblC10orf10 - 10q11.21 [CytoView hg19]  C10orf10 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIC10orf10 [Mapview hg19]  C10orf10 [Mapview hg38]
OMIM611309   
Gene and transcription
Genbank (Entrez)AB022718 AB025244 AK002191 AK098476 AK300839
RefSeq transcript (Entrez)NM_007021
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929371
Consensus coding sequences : CCDS (NCBI)C10orf10
Cluster EST : UnigeneHs.93675 [ NCBI ]
CGAP (NCI)Hs.93675
Alternative Splicing GalleryENSG00000165507
Gene ExpressionC10orf10 [ NCBI-GEO ]   C10orf10 [ EBI - ARRAY_EXPRESS ]   C10orf10 [ SEEK ]   C10orf10 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11067
GTEX Portal (Tissue expression)C10orf10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTK1
Splice isoforms : SwissVarQ9NTK1
PhosPhoSitePlusQ9NTK1
Domains : Interpro (EBI)DEPP   
Domain families : Pfam (Sanger)DEPP (PF15343)   
Domain families : Pfam (NCBI)pfam15343   
Domain structure : Prodom (Prabi Lyon)DEPP (PD209750)   
Conserved Domain (NCBI)C10orf10
DMDM Disease mutations11067
Blocks (Seattle)C10orf10
SuperfamilyQ9NTK1
Human Protein AtlasENSG00000165507
Peptide AtlasQ9NTK1
HPRD12558
IPIIPI00550786   IPI00645183   IPI00942438   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTK1
IntAct (EBI)Q9NTK1
FunCoupENSG00000165507
BioGRIDC10orf10
STRING (EMBL)C10orf10
ZODIACC10orf10
Ontologies - Pathways
QuickGOQ9NTK1
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkC10orf10
Atlas of Cancer Signalling NetworkC10orf10
Wikipedia pathwaysC10orf10
Orthology - Evolution
OrthoDB11067
GeneTree (enSembl)ENSG00000165507
Phylogenetic Trees/Animal Genes : TreeFamC10orf10
HOVERGENQ9NTK1
HOGENOMQ9NTK1
Homologs : HomoloGeneC10orf10
Homology/Alignments : Family Browser (UCSC)C10orf10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf10
dbVarC10orf10
ClinVarC10orf10
1000_GenomesC10orf10 
Exome Variant ServerC10orf10
ExAC (Exome Aggregation Consortium)C10orf10 (select the gene name)
Genetic variants : HAPMAP11067
Genomic Variants (DGV)C10orf10 [DGVbeta]
DECIPHER (Syndromes)10:45471709-45474330  ENSG00000165507
CONAN: Copy Number AnalysisC10orf10 
Mutations
ICGC Data PortalC10orf10 
TCGA Data PortalC10orf10 
Broad Tumor PortalC10orf10
OASIS PortalC10orf10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch C10orf10
DgiDB (Drug Gene Interaction Database)C10orf10
DoCM (Curated mutations)C10orf10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf10 (select a term)
intoGenC10orf10
Cancer3DC10orf10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611309   
Orphanet
MedgenC10orf10
Genetic Testing Registry C10orf10
NextProtQ9NTK1 [Medical]
TSGene11067
GENETestsC10orf10
Huge Navigator C10orf10 [HugePedia]
snp3D : Map Gene to Disease11067
BioCentury BCIQC10orf10
ClinGenC10orf10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11067
Chemical/Pharm GKB GenePA128394583
Clinical trialC10orf10
Miscellaneous
canSAR (ICR)C10orf10 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf10
EVEXC10orf10
GoPubMedC10orf10
iHOPC10orf10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:22 CEST 2017

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