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C10orf105 (chromosome 10 open reading frame 105)

Identity

Alias_symbol (synonym)FLJ00245
Other alias-
HGNC (Hugo) C10orf105
LocusID (NCBI) 414152
Atlas_Id 60850
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71711701 and ends at 71719821 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DYM (18q21.1) / C10orf105 (10q22.1)POLR3H (22q13.2) / C10orf105 (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(10;18)(q22;q21) DYM/C10orf105

External links

Nomenclature
HGNC (Hugo)C10orf105   20304
Cards
Entrez_Gene (NCBI)C10orf105  414152  chromosome 10 open reading frame 105
Aliases
GeneCards (Weizmann)C10orf105
Ensembl hg19 (Hinxton)ENSG00000214688 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214688 [Gene_View]  ENSG00000214688 [Sequence]  chr10:71711701-71719821 [Contig_View]  C10orf105 [Vega]
ICGC DataPortalENSG00000214688
TCGA cBioPortalC10orf105
AceView (NCBI)C10orf105
Genatlas (Paris)C10orf105
WikiGenes414152
SOURCE (Princeton)C10orf105
Genetics Home Reference (NIH)C10orf105
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf105  -     chr10:71711701-71719821 -  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf105  -     10q22.1   [Description]    (hg19-Feb_2009)
EnsemblC10orf105 - 10q22.1 [CytoView hg19]  C10orf105 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBIC10orf105 [Mapview hg19]  C10orf105 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074172 AK123442 BC071608 BF508486
RefSeq transcript (Entrez)NM_001164375 NM_001168390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf105
Cluster EST : UnigeneHs.568788 [ NCBI ]
CGAP (NCI)Hs.568788
Alternative Splicing GalleryENSG00000214688
Gene ExpressionC10orf105 [ NCBI-GEO ]   C10orf105 [ EBI - ARRAY_EXPRESS ]   C10orf105 [ SEEK ]   C10orf105 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf105 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414152
GTEX Portal (Tissue expression)C10orf105
Human Protein AtlasENSG00000214688-C10orf105 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEF2
Splice isoforms : SwissVarQ8TEF2
PhosPhoSitePlusQ8TEF2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf105
DMDM Disease mutations414152
Blocks (Seattle)C10orf105
SuperfamilyQ8TEF2
Human Protein Atlas [tissue]ENSG00000214688-C10orf105 [tissue]
Peptide AtlasQ8TEF2
IPIIPI00887665   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEF2
IntAct (EBI)Q8TEF2
FunCoupENSG00000214688
BioGRIDC10orf105
STRING (EMBL)C10orf105
ZODIACC10orf105
Ontologies - Pathways
QuickGOQ8TEF2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC10orf105
Atlas of Cancer Signalling NetworkC10orf105
Wikipedia pathwaysC10orf105
Orthology - Evolution
OrthoDB414152
GeneTree (enSembl)ENSG00000214688
Phylogenetic Trees/Animal Genes : TreeFamC10orf105
HOVERGENQ8TEF2
HOGENOMQ8TEF2
Homologs : HomoloGeneC10orf105
Homology/Alignments : Family Browser (UCSC)C10orf105
Gene fusions - Rearrangements
Fusion : QuiverC10orf105
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf105 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf105
dbVarC10orf105
ClinVarC10orf105
1000_GenomesC10orf105 
Exome Variant ServerC10orf105
ExAC (Exome Aggregation Consortium)ENSG00000214688
GNOMAD BrowserENSG00000214688
Varsome BrowserC10orf105
Genetic variants : HAPMAP414152
Genomic Variants (DGV)C10orf105 [DGVbeta]
DECIPHERC10orf105 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf105 
Mutations
ICGC Data PortalC10orf105 
TCGA Data PortalC10orf105 
Broad Tumor PortalC10orf105
OASIS PortalC10orf105 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf105  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf105
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf105
DgiDB (Drug Gene Interaction Database)C10orf105
DoCM (Curated mutations)C10orf105 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf105 (select a term)
intoGenC10orf105
Cancer3DC10orf105(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC10orf105
MedgenC10orf105
Genetic Testing Registry C10orf105
NextProtQ8TEF2 [Medical]
TSGene414152
GENETestsC10orf105
Target ValidationC10orf105
Huge Navigator C10orf105 [HugePedia]
snp3D : Map Gene to Disease414152
BioCentury BCIQC10orf105
ClinGenC10orf105
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414152
Chemical/Pharm GKB GenePA134923659
Clinical trialC10orf105
Miscellaneous
canSAR (ICR)C10orf105 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf105
EVEXC10orf105
GoPubMedC10orf105
iHOPC10orf105
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:37:12 CEST 2018
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