Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C10orf105 (chromosome 10 open reading frame 105)

Identity

Alias (NCBI)-
HGNC (Hugo) C10orf105
HGNC Alias symbFLJ00245
LocusID (NCBI) 414152
Atlas_Id 60850
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71711701 and ends at 71737824 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DYM (18q21.1) / C10orf105 (10q22.1)POLR3H (22q13.2) / C10orf105 (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(10;18)(q22;q21) DYM/C10orf105

External links

Nomenclature
HGNC (Hugo)C10orf105   20304
Cards
Entrez_Gene (NCBI)C10orf105    chromosome 10 open reading frame 105
Aliases
GeneCards (Weizmann)C10orf105
Ensembl hg19 (Hinxton)ENSG00000214688 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214688 [Gene_View]  ENSG00000214688 [Sequence]  chr10:71711701-71737824 [Contig_View]  C10orf105 [Vega]
ICGC DataPortalENSG00000214688
TCGA cBioPortalC10orf105
AceView (NCBI)C10orf105
Genatlas (Paris)C10orf105
SOURCE (Princeton)C10orf105
Genetics Home Reference (NIH)C10orf105
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf105  -     chr10:71711701-71737824 -  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf105  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathC10orf105 - 10q22.1 [CytoView hg19]  C10orf105 - 10q22.1 [CytoView hg38]
ImmunoBaseENSG00000214688
genome Data Viewer NCBIC10orf105 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK074172 AK123442 BC071608 BF508486
RefSeq transcript (Entrez)NM_001164375 NM_001168390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf105
Alternative Splicing GalleryENSG00000214688
Gene ExpressionC10orf105 [ NCBI-GEO ]   C10orf105 [ EBI - ARRAY_EXPRESS ]   C10orf105 [ SEEK ]   C10orf105 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf105 [ Firebrowse - Broad ]
GenevisibleExpression of C10orf105 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414152
GTEX Portal (Tissue expression)C10orf105
Human Protein AtlasENSG00000214688-C10orf105 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEF2
Splice isoforms : SwissVarQ8TEF2
PhosPhoSitePlusQ8TEF2
Domains : Interpro (EBI)DUF5527   
Domain families : Pfam (Sanger)DUF5527 (PF17665)   
Domain families : Pfam (NCBI)pfam17665   
Conserved Domain (NCBI)C10orf105
Blocks (Seattle)C10orf105
SuperfamilyQ8TEF2
Human Protein Atlas [tissue]ENSG00000214688-C10orf105 [tissue]
Peptide AtlasQ8TEF2
IPIIPI00887665   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEF2
IntAct (EBI)Q8TEF2
BioGRIDC10orf105
STRING (EMBL)C10orf105
ZODIACC10orf105
Ontologies - Pathways
QuickGOQ8TEF2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC10orf105
Atlas of Cancer Signalling NetworkC10orf105
Wikipedia pathwaysC10orf105
Orthology - Evolution
OrthoDB414152
GeneTree (enSembl)ENSG00000214688
Phylogenetic Trees/Animal Genes : TreeFamC10orf105
HOGENOMQ8TEF2
Homologs : HomoloGeneC10orf105
Homology/Alignments : Family Browser (UCSC)C10orf105
Gene fusions - Rearrangements
Fusion : QuiverC10orf105
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf105 [hg38]
dbVarC10orf105
ClinVarC10orf105
MonarchC10orf105
1000_GenomesC10orf105 
Exome Variant ServerC10orf105
GNOMAD BrowserENSG00000214688
Varsome BrowserC10orf105
Genomic Variants (DGV)C10orf105 [DGVbeta]
DECIPHERC10orf105 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf105 
Mutations
ICGC Data PortalC10orf105 
TCGA Data PortalC10orf105 
Broad Tumor PortalC10orf105
OASIS PortalC10orf105 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf105  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC10orf105
Mutations and Diseases : HGMDC10orf105
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf105
DgiDB (Drug Gene Interaction Database)C10orf105
DoCM (Curated mutations)C10orf105 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf105 (select a term)
intoGenC10orf105
Cancer3DC10orf105(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC10orf105
MedgenC10orf105
Genetic Testing Registry C10orf105
NextProtQ8TEF2 [Medical]
GENETestsC10orf105
Target ValidationC10orf105
Huge Navigator C10orf105 [HugePedia]
ClinGenC10orf105
Clinical trials, drugs, therapy
MyCancerGenomeC10orf105
Protein Interactions : CTD
Pharm GKB GenePA134923659
Clinical trialC10orf105
Miscellaneous
canSAR (ICR)C10orf105 (select the gene name)
HarmonizomeC10orf105
DataMed IndexC10orf105
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf105
EVEXC10orf105
GoPubMedC10orf105
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:47:22 CET 2020
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