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C10orf107 (chromosome 10 open reading frame 107)

Identity

Alias_symbol (synonym)bA63A2.1
Em:AC022398.2
MGC44593
Other alias
HGNC (Hugo) C10orf107
LocusID (NCBI) 219621
Atlas_Id 60851
Location 10q21.2  [Link to chromosome band 10q21]
Location_base_pair Starts at 61662961 and ends at 61766333 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf107   28678
Cards
Entrez_Gene (NCBI)C10orf107  219621  chromosome 10 open reading frame 107
AliasesbA63A2.1
GeneCards (Weizmann)C10orf107
Ensembl hg19 (Hinxton)ENSG00000183346 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183346 [Gene_View]  chr10:61662961-61766333 [Contig_View]  C10orf107 [Vega]
ICGC DataPortalENSG00000183346
TCGA cBioPortalC10orf107
AceView (NCBI)C10orf107
Genatlas (Paris)C10orf107
WikiGenes219621
SOURCE (Princeton)C10orf107
Genetics Home Reference (NIH)C10orf107
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf107  -     chr10:61662961-61766333 +  10q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf107  -     10q21.2   [Description]    (hg19-Feb_2009)
EnsemblC10orf107 - 10q21.2 [CytoView hg19]  C10orf107 - 10q21.2 [CytoView hg38]
Mapping of homologs : NCBIC10orf107 [Mapview hg19]  C10orf107 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041932 HQ447999
RefSeq transcript (Entrez)NM_173554
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf107
Cluster EST : UnigeneHs.673160 [ NCBI ]
CGAP (NCI)Hs.673160
Alternative Splicing GalleryENSG00000183346
Gene ExpressionC10orf107 [ NCBI-GEO ]   C10orf107 [ EBI - ARRAY_EXPRESS ]   C10orf107 [ SEEK ]   C10orf107 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf107 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219621
GTEX Portal (Tissue expression)C10orf107
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVU9
Splice isoforms : SwissVarQ8IVU9
PhosPhoSitePlusQ8IVU9
Domains : Interpro (EBI)CLAMP   
Domain families : Pfam (Sanger)CLAMP (PF14769)   
Domain families : Pfam (NCBI)pfam14769   
Conserved Domain (NCBI)C10orf107
DMDM Disease mutations219621
Blocks (Seattle)C10orf107
SuperfamilyQ8IVU9
Human Protein AtlasENSG00000183346
Peptide AtlasQ8IVU9
HPRD12559
IPIIPI00176323   IPI00643264   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVU9
IntAct (EBI)Q8IVU9
FunCoupENSG00000183346
BioGRIDC10orf107
STRING (EMBL)C10orf107
ZODIACC10orf107
Ontologies - Pathways
QuickGOQ8IVU9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC10orf107
Atlas of Cancer Signalling NetworkC10orf107
Wikipedia pathwaysC10orf107
Orthology - Evolution
OrthoDB219621
GeneTree (enSembl)ENSG00000183346
Phylogenetic Trees/Animal Genes : TreeFamC10orf107
HOVERGENQ8IVU9
HOGENOMQ8IVU9
Homologs : HomoloGeneC10orf107
Homology/Alignments : Family Browser (UCSC)C10orf107
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf107 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf107
dbVarC10orf107
ClinVarC10orf107
1000_GenomesC10orf107 
Exome Variant ServerC10orf107
ExAC (Exome Aggregation Consortium)C10orf107 (select the gene name)
Genetic variants : HAPMAP219621
Genomic Variants (DGV)C10orf107 [DGVbeta]
DECIPHERC10orf107 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf107 
Mutations
ICGC Data PortalC10orf107 
TCGA Data PortalC10orf107 
Broad Tumor PortalC10orf107
OASIS PortalC10orf107 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf107  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf107
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf107
DgiDB (Drug Gene Interaction Database)C10orf107
DoCM (Curated mutations)C10orf107 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf107 (select a term)
intoGenC10orf107
Cancer3DC10orf107(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf107
Genetic Testing Registry C10orf107
NextProtQ8IVU9 [Medical]
TSGene219621
GENETestsC10orf107
Target ValidationC10orf107
Huge Navigator C10orf107 [HugePedia]
snp3D : Map Gene to Disease219621
BioCentury BCIQC10orf107
ClinGenC10orf107
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219621
Chemical/Pharm GKB GenePA134897916
Clinical trialC10orf107
Miscellaneous
canSAR (ICR)C10orf107 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf107
EVEXC10orf107
GoPubMedC10orf107
iHOPC10orf107
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:03 CEST 2017

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