Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C10orf111 (chromosome 10 open reading frame 111)

Identity

Alias_symbol (synonym)MGC35468
bA455B2.4
Other alias
HGNC (Hugo) C10orf111
LocusID (NCBI) 221060
Atlas_Id 60853
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 15095385 and ends at 15097319 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf111   28582
Cards
Entrez_Gene (NCBI)C10orf111  221060  chromosome 10 open reading frame 111
AliasesbA455B2.4
GeneCards (Weizmann)C10orf111
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:15095385-15097319 [Contig_View]  C10orf111 [Vega]
TCGA cBioPortalC10orf111
AceView (NCBI)C10orf111
Genatlas (Paris)C10orf111
WikiGenes221060
SOURCE (Princeton)C10orf111
Genetics Home Reference (NIH)C10orf111
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf111  -     chr10:15095385-15097319 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf111  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblC10orf111 - 10p13 [CytoView hg19]  C10orf111 - 10p13 [CytoView hg38]
Mapping of homologs : NCBIC10orf111 [Mapview hg19]  C10orf111 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK314131 BC029034 BC036401 JF432572
RefSeq transcript (Entrez)NM_153244
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf111
Cluster EST : UnigeneHs.567777 [ NCBI ]
CGAP (NCI)Hs.567777
Gene ExpressionC10orf111 [ NCBI-GEO ]   C10orf111 [ EBI - ARRAY_EXPRESS ]   C10orf111 [ SEEK ]   C10orf111 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf111 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221060
GTEX Portal (Tissue expression)C10orf111
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N326   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N326  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N326
Splice isoforms : SwissVarQ8N326
PhosPhoSitePlusQ8N326
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf111
DMDM Disease mutations221060
Blocks (Seattle)C10orf111
SuperfamilyQ8N326
Peptide AtlasQ8N326
HPRD16572
IPIIPI00166472   
Protein Interaction databases
DIP (DOE-UCLA)Q8N326
IntAct (EBI)Q8N326
BioGRIDC10orf111
STRING (EMBL)C10orf111
ZODIACC10orf111
Ontologies - Pathways
QuickGOQ8N326
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC10orf111
Atlas of Cancer Signalling NetworkC10orf111
Wikipedia pathwaysC10orf111
Orthology - Evolution
OrthoDB221060
Phylogenetic Trees/Animal Genes : TreeFamC10orf111
HOVERGENQ8N326
HOGENOMQ8N326
Homologs : HomoloGeneC10orf111
Homology/Alignments : Family Browser (UCSC)C10orf111
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf111 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf111
dbVarC10orf111
ClinVarC10orf111
1000_GenomesC10orf111 
Exome Variant ServerC10orf111
ExAC (Exome Aggregation Consortium)C10orf111 (select the gene name)
Genetic variants : HAPMAP221060
Genomic Variants (DGV)C10orf111 [DGVbeta]
DECIPHERC10orf111 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf111 
Mutations
ICGC Data PortalC10orf111 
TCGA Data PortalC10orf111 
Broad Tumor PortalC10orf111
OASIS PortalC10orf111 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf111  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf111
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf111
DgiDB (Drug Gene Interaction Database)C10orf111
DoCM (Curated mutations)C10orf111 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf111 (select a term)
intoGenC10orf111
Cancer3DC10orf111(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf111
Genetic Testing Registry C10orf111
NextProtQ8N326 [Medical]
TSGene221060
GENETestsC10orf111
Target ValidationC10orf111
Huge Navigator C10orf111 [HugePedia]
snp3D : Map Gene to Disease221060
BioCentury BCIQC10orf111
ClinGenC10orf111
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221060
Chemical/Pharm GKB GenePA134990460
Clinical trialC10orf111
Miscellaneous
canSAR (ICR)C10orf111 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf111
EVEXC10orf111
GoPubMedC10orf111
iHOPC10orf111
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:02:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.