Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf113 (chromosome 10 open reading frame 113)

Identity

Alias_symbol (synonym)bA165O3.1
Other alias
HGNC (Hugo) C10orf113
LocusID (NCBI) 387638
Atlas_Id 60854
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 21125763 and ends at 21146559 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf113   31447
Cards
Entrez_Gene (NCBI)C10orf113  387638  chromosome 10 open reading frame 113
AliasesbA165O3.1
GeneCards (Weizmann)C10orf113
Ensembl hg19 (Hinxton)ENSG00000204683 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204683 [Gene_View]  chr10:21125763-21146559 [Contig_View]  C10orf113 [Vega]
ICGC DataPortalENSG00000204683
TCGA cBioPortalC10orf113
AceView (NCBI)C10orf113
Genatlas (Paris)C10orf113
WikiGenes387638
SOURCE (Princeton)C10orf113
Genetics Home Reference (NIH)C10orf113
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf113  -     chr10:21125763-21146559 -  10p12.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf113  -     10p12.31   [Description]    (hg19-Feb_2009)
EnsemblC10orf113 - 10p12.31 [CytoView hg19]  C10orf113 - 10p12.31 [CytoView hg38]
Mapping of homologs : NCBIC10orf113 [Mapview hg19]  C10orf113 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI806552 BC140744 BC144447
RefSeq transcript (Entrez)NM_001010896 NM_001177483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf113
Cluster EST : UnigeneHs.664110 [ NCBI ]
CGAP (NCI)Hs.664110
Alternative Splicing GalleryENSG00000204683
Gene ExpressionC10orf113 [ NCBI-GEO ]   C10orf113 [ EBI - ARRAY_EXPRESS ]   C10orf113 [ SEEK ]   C10orf113 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf113 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387638
GTEX Portal (Tissue expression)C10orf113
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZT2
Splice isoforms : SwissVarQ5VZT2
PhosPhoSitePlusQ5VZT2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf113
DMDM Disease mutations387638
Blocks (Seattle)C10orf113
SuperfamilyQ5VZT2
Human Protein AtlasENSG00000204683
Peptide AtlasQ5VZT2
HPRD16573
IPIIPI00376899   IPI00045456   IPI00956323   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZT2
IntAct (EBI)Q5VZT2
FunCoupENSG00000204683
BioGRIDC10orf113
STRING (EMBL)C10orf113
ZODIACC10orf113
Ontologies - Pathways
QuickGOQ5VZT2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC10orf113
Atlas of Cancer Signalling NetworkC10orf113
Wikipedia pathwaysC10orf113
Orthology - Evolution
OrthoDB387638
GeneTree (enSembl)ENSG00000204683
Phylogenetic Trees/Animal Genes : TreeFamC10orf113
HOVERGENQ5VZT2
HOGENOMQ5VZT2
Homologs : HomoloGeneC10orf113
Homology/Alignments : Family Browser (UCSC)C10orf113
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf113 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf113
dbVarC10orf113
ClinVarC10orf113
1000_GenomesC10orf113 
Exome Variant ServerC10orf113
ExAC (Exome Aggregation Consortium)C10orf113 (select the gene name)
Genetic variants : HAPMAP387638
Genomic Variants (DGV)C10orf113 [DGVbeta]
DECIPHERC10orf113 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf113 
Mutations
ICGC Data PortalC10orf113 
TCGA Data PortalC10orf113 
Broad Tumor PortalC10orf113
OASIS PortalC10orf113 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf113  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf113
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf113
DgiDB (Drug Gene Interaction Database)C10orf113
DoCM (Curated mutations)C10orf113 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf113 (select a term)
intoGenC10orf113
Cancer3DC10orf113(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf113
Genetic Testing Registry C10orf113
NextProtQ5VZT2 [Medical]
TSGene387638
GENETestsC10orf113
Huge Navigator C10orf113 [HugePedia]
snp3D : Map Gene to Disease387638
BioCentury BCIQC10orf113
ClinGenC10orf113
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387638
Chemical/Pharm GKB GenePA134950749
Clinical trialC10orf113
Miscellaneous
canSAR (ICR)C10orf113 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf113
EVEXC10orf113
GoPubMedC10orf113
iHOPC10orf113
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:02:11 CEST 2017

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