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C10orf12 (chromosome 10 open reading frame 12)

Identity

Alias_symbol (synonym)DKFZP564P1916
FLJ13022
Other alias-
HGNC (Hugo) C10orf12
LocusID (NCBI) 26148
Atlas_Id 60855
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 98741041 and ends at 98745585 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP5C1 (10p14) / C10orf12 (10q24.1)C10orf12 (10q24.1) / BCAR3 (1p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf12   23420
Cards
Entrez_Gene (NCBI)C10orf12  26148  chromosome 10 open reading frame 12
Aliases
GeneCards (Weizmann)C10orf12
Ensembl hg19 (Hinxton)ENSG00000155640 [Gene_View]  chr10:98741041-98745585 [Contig_View]  C10orf12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155640 [Gene_View]  chr10:98741041-98745585 [Contig_View]  C10orf12 [Vega]
ICGC DataPortalENSG00000155640
TCGA cBioPortalC10orf12
AceView (NCBI)C10orf12
Genatlas (Paris)C10orf12
WikiGenes26148
SOURCE (Princeton)C10orf12
Genetics Home Reference (NIH)C10orf12
Genomic and cartography
GoldenPath hg19 (UCSC)C10orf12  -     chr10:98741041-98745585 +  10q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C10orf12  -     10q24.1   [Description]    (hg38-Dec_2013)
EnsemblC10orf12 - 10q24.1 [CytoView hg19]  C10orf12 - 10q24.1 [CytoView hg38]
Mapping of homologs : NCBIC10orf12 [Mapview hg19]  C10orf12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023084 AK025166 AK126886 AL049938 BC024315
RefSeq transcript (Entrez)NM_015652
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)C10orf12
Cluster EST : UnigeneHs.427927 [ NCBI ]
CGAP (NCI)Hs.427927
Alternative Splicing GalleryENSG00000155640
Gene ExpressionC10orf12 [ NCBI-GEO ]   C10orf12 [ EBI - ARRAY_EXPRESS ]   C10orf12 [ SEEK ]   C10orf12 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26148
GTEX Portal (Tissue expression)C10orf12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N655   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N655  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N655
Splice isoforms : SwissVarQ8N655
PhosPhoSitePlusQ8N655
Domains : Interpro (EBI)DUF4553   
Domain families : Pfam (Sanger)DUF4553 (PF15090)   
Domain families : Pfam (NCBI)pfam15090   
Conserved Domain (NCBI)C10orf12
DMDM Disease mutations26148
Blocks (Seattle)C10orf12
SuperfamilyQ8N655
Human Protein AtlasENSG00000155640
Peptide AtlasQ8N655
HPRD12563
IPIIPI00166933   IPI01014030   
Protein Interaction databases
DIP (DOE-UCLA)Q8N655
IntAct (EBI)Q8N655
FunCoupENSG00000155640
BioGRIDC10orf12
STRING (EMBL)C10orf12
ZODIACC10orf12
Ontologies - Pathways
QuickGOQ8N655
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC10orf12
Atlas of Cancer Signalling NetworkC10orf12
Wikipedia pathwaysC10orf12
Orthology - Evolution
OrthoDB26148
GeneTree (enSembl)ENSG00000155640
Phylogenetic Trees/Animal Genes : TreeFamC10orf12
HOVERGENQ8N655
HOGENOMQ8N655
Homologs : HomoloGeneC10orf12
Homology/Alignments : Family Browser (UCSC)C10orf12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf12
dbVarC10orf12
ClinVarC10orf12
1000_GenomesC10orf12 
Exome Variant ServerC10orf12
ExAC (Exome Aggregation Consortium)C10orf12 (select the gene name)
Genetic variants : HAPMAP26148
Genomic Variants (DGV)C10orf12 [DGVbeta]
DECIPHER (Syndromes)10:98741041-98745585  ENSG00000155640
CONAN: Copy Number AnalysisC10orf12 
Mutations
ICGC Data PortalC10orf12 
TCGA Data PortalC10orf12 
Broad Tumor PortalC10orf12
OASIS PortalC10orf12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf12
DgiDB (Drug Gene Interaction Database)C10orf12
DoCM (Curated mutations)C10orf12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf12 (select a term)
intoGenC10orf12
Cancer3DC10orf12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf12
Genetic Testing Registry C10orf12
NextProtQ8N655 [Medical]
TSGene26148
GENETestsC10orf12
Huge Navigator C10orf12 [HugePedia]
snp3D : Map Gene to Disease26148
BioCentury BCIQC10orf12
ClinGenC10orf12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26148
Chemical/Pharm GKB GenePA134866687
Clinical trialC10orf12
Miscellaneous
canSAR (ICR)C10orf12 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf12
EVEXC10orf12
GoPubMedC10orf12
iHOPC10orf12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:12 CET 2017

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