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C10orf120 (chromosome 10 open reading frame 120)

Identity

Alias_symbol (synonym)bA318C4.1
Other alias
HGNC (Hugo) C10orf120
LocusID (NCBI) 399814
Atlas_Id 60856
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 122697709 and ends at 122699822 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NT5C2 (10q24.32) / C10orf120 (10q26.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf120   25707
Cards
Entrez_Gene (NCBI)C10orf120  399814  chromosome 10 open reading frame 120
AliasesbA318C4.1
GeneCards (Weizmann)C10orf120
Ensembl hg19 (Hinxton)ENSG00000183559 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183559 [Gene_View]  chr10:122697709-122699822 [Contig_View]  C10orf120 [Vega]
ICGC DataPortalENSG00000183559
TCGA cBioPortalC10orf120
AceView (NCBI)C10orf120
Genatlas (Paris)C10orf120
WikiGenes399814
SOURCE (Princeton)C10orf120
Genetics Home Reference (NIH)C10orf120
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf120  -     chr10:122697709-122699822 -  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf120  -     10q26.13   [Description]    (hg19-Feb_2009)
EnsemblC10orf120 - 10q26.13 [CytoView hg19]  C10orf120 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBIC10orf120 [Mapview hg19]  C10orf120 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL704711 BC065903 BC140922
RefSeq transcript (Entrez)NM_001010912
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf120
Cluster EST : UnigeneHs.745528 [ NCBI ]
CGAP (NCI)Hs.745528
Alternative Splicing GalleryENSG00000183559
Gene ExpressionC10orf120 [ NCBI-GEO ]   C10orf120 [ EBI - ARRAY_EXPRESS ]   C10orf120 [ SEEK ]   C10orf120 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf120 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399814
GTEX Portal (Tissue expression)C10orf120
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SQS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SQS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SQS8
Splice isoforms : SwissVarQ5SQS8
PhosPhoSitePlusQ5SQS8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf120
DMDM Disease mutations399814
Blocks (Seattle)C10orf120
SuperfamilyQ5SQS8
Human Protein AtlasENSG00000183559
Peptide AtlasQ5SQS8
HPRD16577
IPIIPI00400925   IPI00642152   
Protein Interaction databases
DIP (DOE-UCLA)Q5SQS8
IntAct (EBI)Q5SQS8
FunCoupENSG00000183559
BioGRIDC10orf120
STRING (EMBL)C10orf120
ZODIACC10orf120
Ontologies - Pathways
QuickGOQ5SQS8
Ontology : AmiGOubiquitin ligase complex  nucleus  
Ontology : EGO-EBIubiquitin ligase complex  nucleus  
NDEx NetworkC10orf120
Atlas of Cancer Signalling NetworkC10orf120
Wikipedia pathwaysC10orf120
Orthology - Evolution
OrthoDB399814
GeneTree (enSembl)ENSG00000183559
Phylogenetic Trees/Animal Genes : TreeFamC10orf120
HOVERGENQ5SQS8
HOGENOMQ5SQS8
Homologs : HomoloGeneC10orf120
Homology/Alignments : Family Browser (UCSC)C10orf120
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf120 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf120
dbVarC10orf120
ClinVarC10orf120
1000_GenomesC10orf120 
Exome Variant ServerC10orf120
ExAC (Exome Aggregation Consortium)C10orf120 (select the gene name)
Genetic variants : HAPMAP399814
Genomic Variants (DGV)C10orf120 [DGVbeta]
DECIPHERC10orf120 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf120 
Mutations
ICGC Data PortalC10orf120 
TCGA Data PortalC10orf120 
Broad Tumor PortalC10orf120
OASIS PortalC10orf120 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf120  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf120
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf120
DgiDB (Drug Gene Interaction Database)C10orf120
DoCM (Curated mutations)C10orf120 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf120 (select a term)
intoGenC10orf120
Cancer3DC10orf120(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf120
Genetic Testing Registry C10orf120
NextProtQ5SQS8 [Medical]
TSGene399814
GENETestsC10orf120
Huge Navigator C10orf120 [HugePedia]
snp3D : Map Gene to Disease399814
BioCentury BCIQC10orf120
ClinGenC10orf120
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399814
Chemical/Pharm GKB GenePA134871711
Clinical trialC10orf120
Miscellaneous
canSAR (ICR)C10orf120 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf120
EVEXC10orf120
GoPubMedC10orf120
iHOPC10orf120
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:02:12 CEST 2017

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