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C10orf128 (chromosome 10 open reading frame 128)

Identity

Alias_symbol (synonym)Em:AC084727.5
Other alias-
HGNC (Hugo) C10orf128
LocusID (NCBI) 170371
Atlas_Id 60858
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 50362769 and ends at 50396445 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf128   27274
Cards
Entrez_Gene (NCBI)C10orf128  170371  chromosome 10 open reading frame 128
Aliases
GeneCards (Weizmann)C10orf128
Ensembl hg19 (Hinxton)ENSG00000204161 [Gene_View]  chr10:50362769-50396445 [Contig_View]  C10orf128 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204161 [Gene_View]  chr10:50362769-50396445 [Contig_View]  C10orf128 [Vega]
ICGC DataPortalENSG00000204161
TCGA cBioPortalC10orf128
AceView (NCBI)C10orf128
Genatlas (Paris)C10orf128
WikiGenes170371
SOURCE (Princeton)C10orf128
Genetics Home Reference (NIH)C10orf128
Genomic and cartography
GoldenPath hg19 (UCSC)C10orf128  -     chr10:50362769-50396445 -  10q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C10orf128  -     10q11.23   [Description]    (hg38-Dec_2013)
EnsemblC10orf128 - 10q11.23 [CytoView hg19]  C10orf128 - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIC10orf128 [Mapview hg19]  C10orf128 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303891 AL524299 AL832399 BC031641 BC037922
RefSeq transcript (Entrez)NM_001010863 NM_001288740 NM_001288741 NM_001288742 NM_001288743
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)C10orf128
Cluster EST : UnigeneHs.385493 [ NCBI ]
CGAP (NCI)Hs.385493
Alternative Splicing GalleryENSG00000204161
Gene ExpressionC10orf128 [ NCBI-GEO ]   C10orf128 [ EBI - ARRAY_EXPRESS ]   C10orf128 [ SEEK ]   C10orf128 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf128 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170371
GTEX Portal (Tissue expression)C10orf128
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T292   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T292  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T292
Splice isoforms : SwissVarQ5T292
PhosPhoSitePlusQ5T292
Domains : Interpro (EBI)DUF4514   
Domain families : Pfam (Sanger)DUF4514 (PF14986)   
Domain families : Pfam (NCBI)pfam14986   
Conserved Domain (NCBI)C10orf128
DMDM Disease mutations170371
Blocks (Seattle)C10orf128
SuperfamilyQ5T292
Human Protein AtlasENSG00000204161
Peptide AtlasQ5T292
IPIIPI00513963   IPI00514406   IPI00869108   IPI00456030   IPI00514560   IPI00514802   
Protein Interaction databases
DIP (DOE-UCLA)Q5T292
IntAct (EBI)Q5T292
FunCoupENSG00000204161
BioGRIDC10orf128
STRING (EMBL)C10orf128
ZODIACC10orf128
Ontologies - Pathways
QuickGOQ5T292
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC10orf128
Atlas of Cancer Signalling NetworkC10orf128
Wikipedia pathwaysC10orf128
Orthology - Evolution
OrthoDB170371
GeneTree (enSembl)ENSG00000204161
Phylogenetic Trees/Animal Genes : TreeFamC10orf128
HOVERGENQ5T292
HOGENOMQ5T292
Homologs : HomoloGeneC10orf128
Homology/Alignments : Family Browser (UCSC)C10orf128
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf128 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf128
dbVarC10orf128
ClinVarC10orf128
1000_GenomesC10orf128 
Exome Variant ServerC10orf128
ExAC (Exome Aggregation Consortium)C10orf128 (select the gene name)
Genetic variants : HAPMAP170371
Genomic Variants (DGV)C10orf128 [DGVbeta]
DECIPHER (Syndromes)10:50362769-50396445  ENSG00000204161
CONAN: Copy Number AnalysisC10orf128 
Mutations
ICGC Data PortalC10orf128 
TCGA Data PortalC10orf128 
Broad Tumor PortalC10orf128
OASIS PortalC10orf128 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf128  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf128
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf128
DgiDB (Drug Gene Interaction Database)C10orf128
DoCM (Curated mutations)C10orf128 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf128 (select a term)
intoGenC10orf128
Cancer3DC10orf128(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf128
Genetic Testing Registry C10orf128
NextProtQ5T292 [Medical]
TSGene170371
GENETestsC10orf128
Huge Navigator C10orf128 [HugePedia]
snp3D : Map Gene to Disease170371
BioCentury BCIQC10orf128
ClinGenC10orf128
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170371
Chemical/Pharm GKB GenePA134962893
Clinical trialC10orf128
Miscellaneous
canSAR (ICR)C10orf128 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf128
EVEXC10orf128
GoPubMedC10orf128
iHOPC10orf128
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:12 CET 2017

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