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C10orf142 (chromosome 10 open reading frame 142)

Identity

Other alias-
HGNC (Hugo) C10orf142
LocusID (NCBI) 100130539
Atlas_Id 76586
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 44292750 and ends at 44294649 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf142   51236
Cards
Entrez_Gene (NCBI)C10orf142  100130539  chromosome 10 open reading frame 142
Aliases
GeneCards (Weizmann)C10orf142
Ensembl hg19 (Hinxton)ENSG00000277288 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277288 [Gene_View]  chr10:44292750-44294649 [Contig_View]  C10orf142 [Vega]
ICGC DataPortalENSG00000277288
TCGA cBioPortalC10orf142
AceView (NCBI)C10orf142
Genatlas (Paris)C10orf142
WikiGenes100130539
SOURCE (Princeton)C10orf142
Genetics Home Reference (NIH)C10orf142
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf142  -     chr10:44292750-44294649 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf142  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblC10orf142 - 10q11.21 [CytoView hg19]  C10orf142 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIC10orf142 [Mapview hg19]  C10orf142 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK295550
RefSeq transcript (Entrez)NM_001258000
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf142
Cluster EST : UnigeneHs.694626 [ NCBI ]
CGAP (NCI)Hs.694626
Alternative Splicing GalleryENSG00000277288
Gene ExpressionC10orf142 [ NCBI-GEO ]   C10orf142 [ EBI - ARRAY_EXPRESS ]   C10orf142 [ SEEK ]   C10orf142 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf142 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130539
GTEX Portal (Tissue expression)C10orf142
Protein : pattern, domain, 3D structure
UniProt/SwissProtB7Z368   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB7Z368  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB7Z368
Splice isoforms : SwissVarB7Z368
PhosPhoSitePlusB7Z368
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf142
DMDM Disease mutations100130539
Blocks (Seattle)C10orf142
SuperfamilyB7Z368
Human Protein AtlasENSG00000277288
Peptide AtlasB7Z368
IPIIPI00922685   
Protein Interaction databases
DIP (DOE-UCLA)B7Z368
IntAct (EBI)B7Z368
FunCoupENSG00000277288
BioGRIDC10orf142
STRING (EMBL)C10orf142
ZODIACC10orf142
Ontologies - Pathways
QuickGOB7Z368
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC10orf142
Atlas of Cancer Signalling NetworkC10orf142
Wikipedia pathwaysC10orf142
Orthology - Evolution
OrthoDB100130539
GeneTree (enSembl)ENSG00000277288
Phylogenetic Trees/Animal Genes : TreeFamC10orf142
HOVERGENB7Z368
HOGENOMB7Z368
Homologs : HomoloGeneC10orf142
Homology/Alignments : Family Browser (UCSC)C10orf142
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf142 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf142
dbVarC10orf142
ClinVarC10orf142
1000_GenomesC10orf142 
Exome Variant ServerC10orf142
ExAC (Exome Aggregation Consortium)C10orf142 (select the gene name)
Genetic variants : HAPMAP100130539
Genomic Variants (DGV)C10orf142 [DGVbeta]
DECIPHERC10orf142 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf142 
Mutations
ICGC Data PortalC10orf142 
TCGA Data PortalC10orf142 
Broad Tumor PortalC10orf142
OASIS PortalC10orf142 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC10orf142
BioMutasearch C10orf142
DgiDB (Drug Gene Interaction Database)C10orf142
DoCM (Curated mutations)C10orf142 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf142 (select a term)
intoGenC10orf142
Cancer3DC10orf142(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf142
Genetic Testing Registry C10orf142
NextProtB7Z368 [Medical]
TSGene100130539
GENETestsC10orf142
Target ValidationC10orf142
Huge Navigator C10orf142 [HugePedia]
snp3D : Map Gene to Disease100130539
BioCentury BCIQC10orf142
ClinGenC10orf142
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130539
Clinical trialC10orf142
Miscellaneous
canSAR (ICR)C10orf142 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf142
EVEXC10orf142
GoPubMedC10orf142
iHOPC10orf142
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:35 CEST 2017

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