Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf143 (chromosome 10 open reading frame 143)

Identity

Alias_namesLINC00959
long intergenic non-protein coding RNA 959
Other alias
HGNC (Hugo) C10orf143
LocusID (NCBI) 387723
Atlas_Id 79028
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 130066374 and ends at 130110817 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)C10orf143   48677
Cards
Entrez_Gene (NCBI)C10orf143  387723  chromosome 10 open reading frame 143
AliasesLINC00959
GeneCards (Weizmann)C10orf143
Ensembl hg19 (Hinxton)ENSG00000237489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237489 [Gene_View]  chr10:130066374-130110817 [Contig_View]  C10orf143 [Vega]
ICGC DataPortalENSG00000237489
TCGA cBioPortalC10orf143
AceView (NCBI)C10orf143
Genatlas (Paris)C10orf143
WikiGenes387723
SOURCE (Princeton)C10orf143
Genetics Home Reference (NIH)C10orf143
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf143  -     chr10:130066374-130110817 -  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf143  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblC10orf143 - 10q26.3 [CytoView hg19]  C10orf143 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBIC10orf143 [Mapview hg19]  C10orf143 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094118 AW135007 EU250747
RefSeq transcript (Entrez)NM_001355042
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf143
Cluster EST : UnigeneHs.127394 [ NCBI ]
CGAP (NCI)Hs.127394
Alternative Splicing GalleryENSG00000237489
Gene ExpressionC10orf143 [ NCBI-GEO ]   C10orf143 [ EBI - ARRAY_EXPRESS ]   C10orf143 [ SEEK ]   C10orf143 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf143 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)387723
GTEX Portal (Tissue expression)C10orf143
Human Protein AtlasENSG00000237489-C10orf143 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf143
DMDM Disease mutations387723
Blocks (Seattle)C10orf143
Human Protein Atlas [tissue]ENSG00000237489-C10orf143 [tissue]
IPIIPI00909373   
Protein Interaction databases
FunCoupENSG00000237489
BioGRIDC10orf143
STRING (EMBL)C10orf143
ZODIACC10orf143
Ontologies - Pathways
Huge Navigator C10orf143 [HugePedia]
snp3D : Map Gene to Disease387723
BioCentury BCIQC10orf143
ClinGenC10orf143
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387723
Clinical trialC10orf143
Miscellaneous
canSAR (ICR)C10orf143 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf143
EVEXC10orf143
GoPubMedC10orf143
iHOPC10orf143
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:21:15 CET 2017

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