Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf25 (chromosome 10 open reading frame 25)

Identity

Alias_symbol (synonym)FLJ30567
Other alias-
HGNC (Hugo) C10orf25
LocusID (NCBI) 220979
Atlas_Id 60860
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 44997698 and ends at 45000910 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WDR70 (5p13.2) / C10orf25 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf25   23509
Cards
Entrez_Gene (NCBI)C10orf25  220979  chromosome 10 open reading frame 25
Aliases
GeneCards (Weizmann)C10orf25
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:44997698-45000910 [Contig_View]  C10orf25 [Vega]
TCGA cBioPortalC10orf25
AceView (NCBI)C10orf25
Genatlas (Paris)C10orf25
WikiGenes220979
SOURCE (Princeton)C10orf25
Genetics Home Reference (NIH)C10orf25
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf25  -     chr10:44997698-45000910 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf25  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblC10orf25 - 10q11.21 [CytoView hg19]  C10orf25 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIC10orf25 [Mapview hg19]  C10orf25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055129 AK311351 BC062568 BC130369 BC130395
RefSeq transcript (Entrez)NM_001039380
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf25
Cluster EST : UnigeneHs.707791 [ NCBI ]
CGAP (NCI)Hs.707791
Gene ExpressionC10orf25 [ NCBI-GEO ]   C10orf25 [ EBI - ARRAY_EXPRESS ]   C10orf25 [ SEEK ]   C10orf25 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220979
GTEX Portal (Tissue expression)C10orf25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T742   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T742  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T742
Splice isoforms : SwissVarQ5T742
PhosPhoSitePlusQ5T742
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf25
DMDM Disease mutations220979
Blocks (Seattle)C10orf25
SuperfamilyQ5T742
Peptide AtlasQ5T742
IPIIPI00043749   
Protein Interaction databases
DIP (DOE-UCLA)Q5T742
IntAct (EBI)Q5T742
BioGRIDC10orf25
STRING (EMBL)C10orf25
ZODIACC10orf25
Ontologies - Pathways
QuickGOQ5T742
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC10orf25
Atlas of Cancer Signalling NetworkC10orf25
Wikipedia pathwaysC10orf25
Orthology - Evolution
OrthoDB220979
Phylogenetic Trees/Animal Genes : TreeFamC10orf25
HOVERGENQ5T742
HOGENOMQ5T742
Homologs : HomoloGeneC10orf25
Homology/Alignments : Family Browser (UCSC)C10orf25
Gene fusions - Rearrangements
Tumor Fusion PortalC10orf25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf25
dbVarC10orf25
ClinVarC10orf25
1000_GenomesC10orf25 
Exome Variant ServerC10orf25
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP220979
Genomic Variants (DGV)C10orf25 [DGVbeta]
DECIPHERC10orf25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf25 
Mutations
ICGC Data PortalC10orf25 
TCGA Data PortalC10orf25 
Broad Tumor PortalC10orf25
OASIS PortalC10orf25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf25
DgiDB (Drug Gene Interaction Database)C10orf25
DoCM (Curated mutations)C10orf25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf25 (select a term)
intoGenC10orf25
Cancer3DC10orf25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC10orf25
MedgenC10orf25
Genetic Testing Registry C10orf25
NextProtQ5T742 [Medical]
TSGene220979
GENETestsC10orf25
Target ValidationC10orf25
Huge Navigator C10orf25 [HugePedia]
snp3D : Map Gene to Disease220979
BioCentury BCIQC10orf25
ClinGenC10orf25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220979
Chemical/Pharm GKB GenePA134916491
Clinical trialC10orf25
Miscellaneous
canSAR (ICR)C10orf25 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf25
EVEXC10orf25
GoPubMedC10orf25
iHOPC10orf25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:21:15 CET 2017

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