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C10orf35 (chromosome 10 open reading frame 35)

Identity

Other alias-
HGNC (Hugo) C10orf35
LocusID (NCBI) 219738
Atlas_Id 60863
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71390003 and ends at 71393355 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
APIP (11p13) / C10orf35 (10q22.1)EEF2K (16p12.2) / C10orf35 (10q22.1)APIP C10orf35
EEF2K C10orf35

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf35   23519
Cards
Entrez_Gene (NCBI)C10orf35  219738  chromosome 10 open reading frame 35
Aliases
GeneCards (Weizmann)C10orf35
Ensembl hg19 (Hinxton)ENSG00000171224 [Gene_View]  chr10:71390003-71393355 [Contig_View]  C10orf35 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171224 [Gene_View]  chr10:71390003-71393355 [Contig_View]  C10orf35 [Vega]
ICGC DataPortalENSG00000171224
TCGA cBioPortalC10orf35
AceView (NCBI)C10orf35
Genatlas (Paris)C10orf35
WikiGenes219738
SOURCE (Princeton)C10orf35
Genetics Home Reference (NIH)C10orf35
Genomic and cartography
GoldenPath hg19 (UCSC)C10orf35  -     chr10:71390003-71393355 +  10q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C10orf35  -     10q22.1   [Description]    (hg38-Dec_2013)
EnsemblC10orf35 - 10q22.1 [CytoView hg19]  C10orf35 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBIC10orf35 [Mapview hg19]  C10orf35 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC013587 BF510821 CK903062 DB339258 DB465414
RefSeq transcript (Entrez)NM_145306
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)C10orf35
Cluster EST : UnigeneHs.522992 [ NCBI ]
CGAP (NCI)Hs.522992
Alternative Splicing GalleryENSG00000171224
Gene ExpressionC10orf35 [ NCBI-GEO ]   C10orf35 [ EBI - ARRAY_EXPRESS ]   C10orf35 [ SEEK ]   C10orf35 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219738
GTEX Portal (Tissue expression)C10orf35
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96D05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96D05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96D05
Splice isoforms : SwissVarQ96D05
PhosPhoSitePlusQ96D05
Domains : Interpro (EBI)DUF4605   
Domain families : Pfam (Sanger)DUF4605 (PF15378)   
Domain families : Pfam (NCBI)pfam15378   
Conserved Domain (NCBI)C10orf35
DMDM Disease mutations219738
Blocks (Seattle)C10orf35
SuperfamilyQ96D05
Human Protein AtlasENSG00000171224
Peptide AtlasQ96D05
HPRD12573
IPIIPI00060546   IPI00477442   
Protein Interaction databases
DIP (DOE-UCLA)Q96D05
IntAct (EBI)Q96D05
FunCoupENSG00000171224
BioGRIDC10orf35
STRING (EMBL)C10orf35
ZODIACC10orf35
Ontologies - Pathways
QuickGOQ96D05
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkC10orf35
Atlas of Cancer Signalling NetworkC10orf35
Wikipedia pathwaysC10orf35
Orthology - Evolution
OrthoDB219738
GeneTree (enSembl)ENSG00000171224
Phylogenetic Trees/Animal Genes : TreeFamC10orf35
HOVERGENQ96D05
HOGENOMQ96D05
Homologs : HomoloGeneC10orf35
Homology/Alignments : Family Browser (UCSC)C10orf35
Gene fusions - Rearrangements
Fusion: TCGAAPIP C10orf35
Fusion: TCGAEEF2K C10orf35
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf35
dbVarC10orf35
ClinVarC10orf35
1000_GenomesC10orf35 
Exome Variant ServerC10orf35
ExAC (Exome Aggregation Consortium)C10orf35 (select the gene name)
Genetic variants : HAPMAP219738
Genomic Variants (DGV)C10orf35 [DGVbeta]
DECIPHER (Syndromes)10:71390003-71393355  ENSG00000171224
CONAN: Copy Number AnalysisC10orf35 
Mutations
ICGC Data PortalC10orf35 
TCGA Data PortalC10orf35 
Broad Tumor PortalC10orf35
OASIS PortalC10orf35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf35
DgiDB (Drug Gene Interaction Database)C10orf35
DoCM (Curated mutations)C10orf35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf35 (select a term)
intoGenC10orf35
Cancer3DC10orf35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf35
Genetic Testing Registry C10orf35
NextProtQ96D05 [Medical]
TSGene219738
GENETestsC10orf35
Huge Navigator C10orf35 [HugePedia]
snp3D : Map Gene to Disease219738
BioCentury BCIQC10orf35
ClinGenC10orf35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219738
Chemical/Pharm GKB GenePA134863788
Clinical trialC10orf35
Miscellaneous
canSAR (ICR)C10orf35 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf35
EVEXC10orf35
GoPubMedC10orf35
iHOPC10orf35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:14 CET 2017

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