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C10orf53 (chromosome 10 open reading frame 53)

Identity

Alias_symbol (synonym)Em:AC069546.1
Other alias-
HGNC (Hugo) C10orf53
LocusID (NCBI) 282966
Atlas_Id 60864
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 50887684 and ends at 50902948 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MAPK8 (10q11.22) / C10orf53 (10q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf53   27421
Cards
Entrez_Gene (NCBI)C10orf53  282966  chromosome 10 open reading frame 53
Aliases
GeneCards (Weizmann)C10orf53
Ensembl hg19 (Hinxton) [Gene_View]  chr10:50887684-50902948 [Contig_View]  C10orf53 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:50887684-50902948 [Contig_View]  C10orf53 [Vega]
TCGA cBioPortalC10orf53
AceView (NCBI)C10orf53
Genatlas (Paris)C10orf53
WikiGenes282966
SOURCE (Princeton)C10orf53
Genetics Home Reference (NIH)C10orf53
Genomic and cartography
GoldenPath hg19 (UCSC)C10orf53  -     chr10:50887684-50902948 +  10q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C10orf53  -     10q11.23   [Description]    (hg38-Dec_2013)
EnsemblC10orf53 - 10q11.23 [CytoView hg19]  C10orf53 - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIC10orf53 [Mapview hg19]  C10orf53 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091773 AW182169 BC028127 BX102324 DB043416
RefSeq transcript (Entrez)NM_001042427 NM_182554
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)C10orf53
Cluster EST : UnigeneHs.131287 [ NCBI ]
CGAP (NCI)Hs.131287
Gene ExpressionC10orf53 [ NCBI-GEO ]   C10orf53 [ EBI - ARRAY_EXPRESS ]   C10orf53 [ SEEK ]   C10orf53 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf53 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)282966
GTEX Portal (Tissue expression)C10orf53
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6V4
Splice isoforms : SwissVarQ8N6V4
PhosPhoSitePlusQ8N6V4
Domains : Interpro (EBI)UPF0728   
Domain families : Pfam (Sanger)UPF0728 (PF15092)   
Domain families : Pfam (NCBI)pfam15092   
Conserved Domain (NCBI)C10orf53
DMDM Disease mutations282966
Blocks (Seattle)C10orf53
SuperfamilyQ8N6V4
Peptide AtlasQ8N6V4
HPRD12579
IPIIPI00642677   IPI00167097   IPI00926181   IPI00914022   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6V4
IntAct (EBI)Q8N6V4
BioGRIDC10orf53
STRING (EMBL)C10orf53
ZODIACC10orf53
Ontologies - Pathways
QuickGOQ8N6V4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC10orf53
Atlas of Cancer Signalling NetworkC10orf53
Wikipedia pathwaysC10orf53
Orthology - Evolution
OrthoDB282966
Phylogenetic Trees/Animal Genes : TreeFamC10orf53
HOVERGENQ8N6V4
HOGENOMQ8N6V4
Homologs : HomoloGeneC10orf53
Homology/Alignments : Family Browser (UCSC)C10orf53
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf53 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf53
dbVarC10orf53
ClinVarC10orf53
1000_GenomesC10orf53 
Exome Variant ServerC10orf53
ExAC (Exome Aggregation Consortium)C10orf53 (select the gene name)
Genetic variants : HAPMAP282966
Genomic Variants (DGV)C10orf53 [DGVbeta]
DECIPHER (Syndromes)10:50887684-50902948  
CONAN: Copy Number AnalysisC10orf53 
Mutations
ICGC Data PortalC10orf53 
TCGA Data PortalC10orf53 
Broad Tumor PortalC10orf53
OASIS PortalC10orf53 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf53  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf53
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf53
DgiDB (Drug Gene Interaction Database)C10orf53
DoCM (Curated mutations)C10orf53 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf53 (select a term)
intoGenC10orf53
Cancer3DC10orf53(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf53
Genetic Testing Registry C10orf53
NextProtQ8N6V4 [Medical]
TSGene282966
GENETestsC10orf53
Huge Navigator C10orf53 [HugePedia]
snp3D : Map Gene to Disease282966
BioCentury BCIQC10orf53
ClinGenC10orf53
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD282966
Chemical/Pharm GKB GenePA134895627
Clinical trialC10orf53
Miscellaneous
canSAR (ICR)C10orf53 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf53
EVEXC10orf53
GoPubMedC10orf53
iHOPC10orf53
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:14 CET 2017

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