Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf55 (chromosome 10 open reading frame 55)

Identity

Alias_symbol (synonym)bA417O11.3
Other alias
HGNC (Hugo) C10orf55
LocusID (NCBI) 414236
Atlas_Id 60865
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 75669727 and ends at 75682535 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C10orf55 (10q22.2) / LOC100507412 (-)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf55   31008
Cards
Entrez_Gene (NCBI)C10orf55  414236  chromosome 10 open reading frame 55
AliasesbA417O11.3
GeneCards (Weizmann)C10orf55
Ensembl hg19 (Hinxton)ENSG00000222047 [Gene_View]  chr10:75669727-75682535 [Contig_View]  C10orf55 [Vega]
Ensembl hg38 (Hinxton)ENSG00000222047 [Gene_View]  chr10:75669727-75682535 [Contig_View]  C10orf55 [Vega]
ICGC DataPortalENSG00000222047
TCGA cBioPortalC10orf55
AceView (NCBI)C10orf55
Genatlas (Paris)C10orf55
WikiGenes414236
SOURCE (Princeton)C10orf55
Genetics Home Reference (NIH)C10orf55
Genomic and cartography
GoldenPath hg19 (UCSC)C10orf55  -     chr10:75669727-75682535 -  10q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C10orf55  -     10q22.2   [Description]    (hg38-Dec_2013)
EnsemblC10orf55 - 10q22.2 [CytoView hg19]  C10orf55 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIC10orf55 [Mapview hg19]  C10orf55 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI912900 AK092517 BC049374 LN608347
RefSeq transcript (Entrez)NM_001001791
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)C10orf55
Cluster EST : UnigeneHs.585453 [ NCBI ]
CGAP (NCI)Hs.585453
Alternative Splicing GalleryENSG00000222047
Gene ExpressionC10orf55 [ NCBI-GEO ]   C10orf55 [ EBI - ARRAY_EXPRESS ]   C10orf55 [ SEEK ]   C10orf55 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414236
GTEX Portal (Tissue expression)C10orf55
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SWW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SWW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SWW7
Splice isoforms : SwissVarQ5SWW7
PhosPhoSitePlusQ5SWW7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf55
DMDM Disease mutations414236
Blocks (Seattle)C10orf55
SuperfamilyQ5SWW7
Human Protein AtlasENSG00000222047
Peptide AtlasQ5SWW7
HPRD16580
IPIIPI00168029   
Protein Interaction databases
DIP (DOE-UCLA)Q5SWW7
IntAct (EBI)Q5SWW7
FunCoupENSG00000222047
BioGRIDC10orf55
STRING (EMBL)C10orf55
ZODIACC10orf55
Ontologies - Pathways
QuickGOQ5SWW7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC10orf55
Atlas of Cancer Signalling NetworkC10orf55
Wikipedia pathwaysC10orf55
Orthology - Evolution
OrthoDB414236
GeneTree (enSembl)ENSG00000222047
Phylogenetic Trees/Animal Genes : TreeFamC10orf55
HOVERGENQ5SWW7
HOGENOMQ5SWW7
Homologs : HomoloGeneC10orf55
Homology/Alignments : Family Browser (UCSC)C10orf55
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf55
dbVarC10orf55
ClinVarC10orf55
1000_GenomesC10orf55 
Exome Variant ServerC10orf55
ExAC (Exome Aggregation Consortium)C10orf55 (select the gene name)
Genetic variants : HAPMAP414236
Genomic Variants (DGV)C10orf55 [DGVbeta]
DECIPHER (Syndromes)10:75669727-75682535  ENSG00000222047
CONAN: Copy Number AnalysisC10orf55 
Mutations
ICGC Data PortalC10orf55 
TCGA Data PortalC10orf55 
Broad Tumor PortalC10orf55
OASIS PortalC10orf55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf55
DgiDB (Drug Gene Interaction Database)C10orf55
DoCM (Curated mutations)C10orf55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf55 (select a term)
intoGenC10orf55
Cancer3DC10orf55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf55
Genetic Testing Registry C10orf55
NextProtQ5SWW7 [Medical]
TSGene414236
GENETestsC10orf55
Huge Navigator C10orf55 [HugePedia]
snp3D : Map Gene to Disease414236
BioCentury BCIQC10orf55
ClinGenC10orf55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414236
Chemical/Pharm GKB GenePA134866694
Clinical trialC10orf55
Miscellaneous
canSAR (ICR)C10orf55 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf55
EVEXC10orf55
GoPubMedC10orf55
iHOPC10orf55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:14 CET 2017

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