Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf62 (chromosome 10 open reading frame 62)

Identity

Alias_symbol (synonym)bA548K23.1
Other alias
HGNC (Hugo) C10orf62
LocusID (NCBI) 414157
Atlas_Id 60866
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 99349450 and ends at 99350691 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf62   23294
Cards
Entrez_Gene (NCBI)C10orf62  414157  chromosome 10 open reading frame 62
AliasesbA548K23.1
GeneCards (Weizmann)C10orf62
Ensembl hg19 (Hinxton)ENSG00000203942 [Gene_View]  chr10:99349450-99350691 [Contig_View]  C10orf62 [Vega]
Ensembl hg38 (Hinxton)ENSG00000203942 [Gene_View]  chr10:99349450-99350691 [Contig_View]  C10orf62 [Vega]
ICGC DataPortalENSG00000203942
TCGA cBioPortalC10orf62
AceView (NCBI)C10orf62
Genatlas (Paris)C10orf62
WikiGenes414157
SOURCE (Princeton)C10orf62
Genetics Home Reference (NIH)C10orf62
Genomic and cartography
GoldenPath hg19 (UCSC)C10orf62  -     chr10:99349450-99350691 +  10q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C10orf62  -     10q24.2   [Description]    (hg38-Dec_2013)
EnsemblC10orf62 - 10q24.2 [CytoView hg19]  C10orf62 - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBIC10orf62 [Mapview hg19]  C10orf62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AM392556 AM392795 AM393165 AM393183 AM393504
RefSeq transcript (Entrez)NM_001009997
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_027922 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)C10orf62
Cluster EST : UnigeneHs.662302 [ NCBI ]
CGAP (NCI)Hs.662302
Alternative Splicing GalleryENSG00000203942
Gene ExpressionC10orf62 [ NCBI-GEO ]   C10orf62 [ EBI - ARRAY_EXPRESS ]   C10orf62 [ SEEK ]   C10orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414157
GTEX Portal (Tissue expression)C10orf62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T681   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T681  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T681
Splice isoforms : SwissVarQ5T681
PhosPhoSitePlusQ5T681
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf62
DMDM Disease mutations414157
Blocks (Seattle)C10orf62
SuperfamilyQ5T681
Human Protein AtlasENSG00000203942
Peptide AtlasQ5T681
HPRD16581
IPIIPI00384212   
Protein Interaction databases
DIP (DOE-UCLA)Q5T681
IntAct (EBI)Q5T681
FunCoupENSG00000203942
BioGRIDC10orf62
STRING (EMBL)C10orf62
ZODIACC10orf62
Ontologies - Pathways
QuickGOQ5T681
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC10orf62
Atlas of Cancer Signalling NetworkC10orf62
Wikipedia pathwaysC10orf62
Orthology - Evolution
OrthoDB414157
GeneTree (enSembl)ENSG00000203942
Phylogenetic Trees/Animal Genes : TreeFamC10orf62
HOVERGENQ5T681
HOGENOMQ5T681
Homologs : HomoloGeneC10orf62
Homology/Alignments : Family Browser (UCSC)C10orf62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf62
dbVarC10orf62
ClinVarC10orf62
1000_GenomesC10orf62 
Exome Variant ServerC10orf62
ExAC (Exome Aggregation Consortium)C10orf62 (select the gene name)
Genetic variants : HAPMAP414157
Genomic Variants (DGV)C10orf62 [DGVbeta]
DECIPHER (Syndromes)10:99349450-99350691  ENSG00000203942
CONAN: Copy Number AnalysisC10orf62 
Mutations
ICGC Data PortalC10orf62 
TCGA Data PortalC10orf62 
Broad Tumor PortalC10orf62
OASIS PortalC10orf62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf62
DgiDB (Drug Gene Interaction Database)C10orf62
DoCM (Curated mutations)C10orf62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf62 (select a term)
intoGenC10orf62
Cancer3DC10orf62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf62
Genetic Testing Registry C10orf62
NextProtQ5T681 [Medical]
TSGene414157
GENETestsC10orf62
Huge Navigator C10orf62 [HugePedia]
snp3D : Map Gene to Disease414157
BioCentury BCIQC10orf62
ClinGenC10orf62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414157
Chemical/Pharm GKB GenePA134924151
Clinical trialC10orf62
Miscellaneous
canSAR (ICR)C10orf62 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf62
EVEXC10orf62
GoPubMedC10orf62
iHOPC10orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:14 CET 2017

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