Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf62 (chromosome 10 open reading frame 62)

Identity

Alias (NCBI)bA548K23.1
HGNC (Hugo) C10orf62
HGNC Alias symbbA548K23.1
LocusID (NCBI) 414157
Atlas_Id 60866
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 97589721 and ends at 97590934 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C10orf62   23294
Cards
Entrez_Gene (NCBI)C10orf62    chromosome 10 open reading frame 62
AliasesbA548K23.1
GeneCards (Weizmann)C10orf62
Ensembl hg19 (Hinxton)ENSG00000203942 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203942 [Gene_View]  ENSG00000203942 [Sequence]  chr10:97589721-97590934 [Contig_View]  C10orf62 [Vega]
ICGC DataPortalENSG00000203942
TCGA cBioPortalC10orf62
AceView (NCBI)C10orf62
Genatlas (Paris)C10orf62
SOURCE (Princeton)C10orf62
Genetics Home Reference (NIH)C10orf62
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf62  -     chr10:97589721-97590934 +  10q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf62  -     10q24.2   [Description]    (hg19-Feb_2009)
GoldenPathC10orf62 - 10q24.2 [CytoView hg19]  C10orf62 - 10q24.2 [CytoView hg38]
ImmunoBaseENSG00000203942
Genome Data Viewer NCBIC10orf62 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC037252 BC043281 BI826342
RefSeq transcript (Entrez)NM_001009997
Consensus coding sequences : CCDS (NCBI)C10orf62
Gene ExpressionC10orf62 [ NCBI-GEO ]   C10orf62 [ EBI - ARRAY_EXPRESS ]   C10orf62 [ SEEK ]   C10orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf62 [ Firebrowse - Broad ]
GenevisibleExpression of C10orf62 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414157
GTEX Portal (Tissue expression)C10orf62
Human Protein AtlasENSG00000203942-C10orf62 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T681   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T681  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T681
PhosPhoSitePlusQ5T681
Domains : Interpro (EBI)C10orf62   
Domain families : Pfam (Sanger)DUF5569 (PF17729)   
Domain families : Pfam (NCBI)pfam17729   
Conserved Domain (NCBI)C10orf62
SuperfamilyQ5T681
AlphaFold pdb e-kbQ5T681   
Human Protein Atlas [tissue]ENSG00000203942-C10orf62 [tissue]
HPRD16581
Protein Interaction databases
DIP (DOE-UCLA)Q5T681
IntAct (EBI)Q5T681
BioGRIDC10orf62
STRING (EMBL)C10orf62
ZODIACC10orf62
Ontologies - Pathways
QuickGOQ5T681
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC10orf62
Atlas of Cancer Signalling NetworkC10orf62
Wikipedia pathwaysC10orf62
Orthology - Evolution
OrthoDB414157
GeneTree (enSembl)ENSG00000203942
Phylogenetic Trees/Animal Genes : TreeFamC10orf62
Homologs : HomoloGeneC10orf62
Homology/Alignments : Family Browser (UCSC)C10orf62
Gene fusions - Rearrangements
Fusion : QuiverC10orf62
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf62
dbVarC10orf62
ClinVarC10orf62
MonarchC10orf62
1000_GenomesC10orf62 
Exome Variant ServerC10orf62
GNOMAD BrowserENSG00000203942
Varsome BrowserC10orf62
ACMGC10orf62 variants
VarityQ5T681
Genomic Variants (DGV)C10orf62 [DGVbeta]
DECIPHERC10orf62 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf62 
Mutations
ICGC Data PortalC10orf62 
TCGA Data PortalC10orf62 
Broad Tumor PortalC10orf62
OASIS PortalC10orf62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf62  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC10orf62
Mutations and Diseases : HGMDC10orf62
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC10orf62
DgiDB (Drug Gene Interaction Database)C10orf62
DoCM (Curated mutations)C10orf62
CIViC (Clinical Interpretations of Variants in Cancer)C10orf62
Cancer3DC10orf62
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC10orf62
MedgenC10orf62
Genetic Testing Registry C10orf62
NextProtQ5T681 [Medical]
GENETestsC10orf62
Target ValidationC10orf62
Huge Navigator C10orf62 [HugePedia]
ClinGenC10orf62
Clinical trials, drugs, therapy
MyCancerGenomeC10orf62
Protein Interactions : CTDC10orf62
Pharm GKB GenePA134924151
PharosQ5T681
Clinical trialC10orf62
Miscellaneous
canSAR (ICR)C10orf62
HarmonizomeC10orf62
DataMed IndexC10orf62
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC10orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:41 CEST 2021

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