Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf67 (chromosome 10 open reading frame 67)

Identity

Alias (NCBI)C10orf115
LINC01552
HGNC (Hugo) C10orf67
LocusID (NCBI) 256815
Atlas_Id 66088
Location 10p12.2  [Link to chromosome band 10p12]
Location_base_pair Starts at 23316587 and ends at 23344797 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C10orf67   28716
Cards
Entrez_Gene (NCBI)C10orf67    chromosome 10 open reading frame 67
AliasesC10orf115; LINC01552
GeneCards (Weizmann)C10orf67
Ensembl hg19 (Hinxton)ENSG00000179133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179133 [Gene_View]  ENSG00000179133 [Sequence]  chr10:23316587-23344797 [Contig_View]  C10orf67 [Vega]
ICGC DataPortalENSG00000179133
TCGA cBioPortalC10orf67
AceView (NCBI)C10orf67
Genatlas (Paris)C10orf67
SOURCE (Princeton)C10orf67
Genetics Home Reference (NIH)C10orf67
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf67  -     chr10:23316587-23344797 -  10p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf67  -     10p12.2   [Description]    (hg19-Feb_2009)
GoldenPathC10orf67 - 10p12.2 [CytoView hg19]  C10orf67 - 10p12.2 [CytoView hg38]
ImmunoBaseENSG00000179133
Genome Data Viewer NCBIC10orf67 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC035732 BM976076
RefSeq transcript (Entrez)NM_001351306 NM_001365862 NM_001371909 NM_153714
Consensus coding sequences : CCDS (NCBI)C10orf67
Gene ExpressionC10orf67 [ NCBI-GEO ]   C10orf67 [ EBI - ARRAY_EXPRESS ]   C10orf67 [ SEEK ]   C10orf67 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf67 [ Firebrowse - Broad ]
GenevisibleExpression of C10orf67 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256815
GTEX Portal (Tissue expression)C10orf67
Human Protein AtlasENSG00000179133-C10orf67 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYJ2
PhosPhoSitePlusQ8IYJ2
Domains : Interpro (EBI)C10orf67-like    DUF4709    DUF4724   
Domain families : Pfam (Sanger)DUF4709 (PF15821)    DUF4724 (PF15852)   
Domain families : Pfam (NCBI)pfam15821    pfam15852   
Conserved Domain (NCBI)C10orf67
SuperfamilyQ8IYJ2
AlphaFold pdb e-kbQ8IYJ2   
Human Protein Atlas [tissue]ENSG00000179133-C10orf67 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8IYJ2
IntAct (EBI)Q8IYJ2
BioGRIDC10orf67
STRING (EMBL)C10orf67
ZODIACC10orf67
Ontologies - Pathways
QuickGOQ8IYJ2
Ontology : AmiGOprotein binding  mitochondrion  
Ontology : EGO-EBIprotein binding  mitochondrion  
NDEx NetworkC10orf67
Atlas of Cancer Signalling NetworkC10orf67
Wikipedia pathwaysC10orf67
Orthology - Evolution
OrthoDB256815
GeneTree (enSembl)ENSG00000179133
Phylogenetic Trees/Animal Genes : TreeFamC10orf67
Homologs : HomoloGeneC10orf67
Homology/Alignments : Family Browser (UCSC)C10orf67
Gene fusions - Rearrangements
Fusion : QuiverC10orf67
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf67 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf67
dbVarC10orf67
ClinVarC10orf67
MonarchC10orf67
1000_GenomesC10orf67 
Exome Variant ServerC10orf67
GNOMAD BrowserENSG00000179133
Varsome BrowserC10orf67
ACMGC10orf67 variants
VarityQ8IYJ2
Genomic Variants (DGV)C10orf67 [DGVbeta]
DECIPHERC10orf67 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf67 
Mutations
ICGC Data PortalC10orf67 
TCGA Data PortalC10orf67 
Broad Tumor PortalC10orf67
OASIS PortalC10orf67 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC10orf67
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC10orf67
DgiDB (Drug Gene Interaction Database)C10orf67
DoCM (Curated mutations)C10orf67
CIViC (Clinical Interpretations of Variants in Cancer)C10orf67
Cancer3DC10orf67
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC10orf67
MedgenC10orf67
Genetic Testing Registry C10orf67
NextProtQ8IYJ2 [Medical]
GENETestsC10orf67
Target ValidationC10orf67
Huge Navigator C10orf67 [HugePedia]
ClinGenC10orf67
Clinical trials, drugs, therapy
MyCancerGenomeC10orf67
Protein Interactions : CTDC10orf67
Pharm GKB GenePA134915530
PharosQ8IYJ2
Clinical trialC10orf67
Miscellaneous
canSAR (ICR)C10orf67
HarmonizomeC10orf67
DataMed IndexC10orf67
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC10orf67
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:41 CEST 2021

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