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C10orf67 (chromosome 10 open reading frame 67)

Identity

Alias_namesLINC01552
C10orf115
long intergenic non-protein coding RNA 1552
chromosome 10 open reading frame 115
Alias_symbol (synonym)MGC46732
bA215C7.4
Other alias
HGNC (Hugo) C10orf67
LocusID (NCBI) 256815
Atlas_Id 60867
Location 10p12.2  [Link to chromosome band 10p12]
Location_base_pair Starts at 23316591 and ends at 23344843 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf67   28716
Cards
Entrez_Gene (NCBI)C10orf67  256815  chromosome 10 open reading frame 67
AliasesC10orf115; LINC01552; bA215C7.4
GeneCards (Weizmann)C10orf67
Ensembl hg19 (Hinxton)ENSG00000179133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179133 [Gene_View]  chr10:23316591-23344843 [Contig_View]  C10orf67 [Vega]
ICGC DataPortalENSG00000179133
TCGA cBioPortalC10orf67
AceView (NCBI)C10orf67
Genatlas (Paris)C10orf67
WikiGenes256815
SOURCE (Princeton)C10orf67
Genetics Home Reference (NIH)C10orf67
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf67  -     chr10:23316591-23344843 -  10p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf67  -     10p12.2   [Description]    (hg19-Feb_2009)
EnsemblC10orf67 - 10p12.2 [CytoView hg19]  C10orf67 - 10p12.2 [CytoView hg38]
Mapping of homologs : NCBIC10orf67 [Mapview hg19]  C10orf67 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035732 BM976076
RefSeq transcript (Entrez)NM_001351306 NM_153714
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf67
Cluster EST : UnigeneHs.522360 [ NCBI ]
CGAP (NCI)Hs.522360
Alternative Splicing GalleryENSG00000179133
Gene ExpressionC10orf67 [ NCBI-GEO ]   C10orf67 [ EBI - ARRAY_EXPRESS ]   C10orf67 [ SEEK ]   C10orf67 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf67 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256815
GTEX Portal (Tissue expression)C10orf67
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYJ2
Splice isoforms : SwissVarQ8IYJ2
PhosPhoSitePlusQ8IYJ2
Domains : Interpro (EBI)DUF4709    DUF4724   
Domain families : Pfam (Sanger)DUF4709 (PF15821)    DUF4724 (PF15852)   
Domain families : Pfam (NCBI)pfam15821    pfam15852   
Conserved Domain (NCBI)C10orf67
DMDM Disease mutations256815
Blocks (Seattle)C10orf67
SuperfamilyQ8IYJ2
Human Protein AtlasENSG00000179133
Peptide AtlasQ8IYJ2
HPRD12585
IPIIPI00217788   IPI00514169   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYJ2
IntAct (EBI)Q8IYJ2
FunCoupENSG00000179133
BioGRIDC10orf67
STRING (EMBL)C10orf67
ZODIACC10orf67
Ontologies - Pathways
QuickGOQ8IYJ2
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkC10orf67
Atlas of Cancer Signalling NetworkC10orf67
Wikipedia pathwaysC10orf67
Orthology - Evolution
OrthoDB256815
GeneTree (enSembl)ENSG00000179133
Phylogenetic Trees/Animal Genes : TreeFamC10orf67
HOVERGENQ8IYJ2
HOGENOMQ8IYJ2
Homologs : HomoloGeneC10orf67
Homology/Alignments : Family Browser (UCSC)C10orf67
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf67 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf67
dbVarC10orf67
ClinVarC10orf67
1000_GenomesC10orf67 
Exome Variant ServerC10orf67
ExAC (Exome Aggregation Consortium)C10orf67 (select the gene name)
Genetic variants : HAPMAP256815
Genomic Variants (DGV)C10orf67 [DGVbeta]
DECIPHERC10orf67 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf67 
Mutations
ICGC Data PortalC10orf67 
TCGA Data PortalC10orf67 
Broad Tumor PortalC10orf67
OASIS PortalC10orf67 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf67  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf67
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf67
DgiDB (Drug Gene Interaction Database)C10orf67
DoCM (Curated mutations)C10orf67 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf67 (select a term)
intoGenC10orf67
Cancer3DC10orf67(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf67
Genetic Testing Registry C10orf67
NextProtQ8IYJ2 [Medical]
TSGene256815
GENETestsC10orf67
Target ValidationC10orf67
Huge Navigator C10orf67 [HugePedia]
snp3D : Map Gene to Disease256815
BioCentury BCIQC10orf67
ClinGenC10orf67
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256815
Chemical/Pharm GKB GenePA134915530
Clinical trialC10orf67
Miscellaneous
canSAR (ICR)C10orf67 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf67
EVEXC10orf67
GoPubMedC10orf67
iHOPC10orf67
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:36 CEST 2017

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