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C10orf71 (chromosome 10 open reading frame 71)

Identity

Alias (NCBI)CEFIP
HGNC (Hugo) C10orf71
HGNC Alias symbFLJ45913
LocusID (NCBI) 118461
Atlas_Id 60868
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 49299170 and ends at 49327492 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C10orf71 (10q11.23) / C10orf71 (10q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C10orf71   26973
Cards
Entrez_Gene (NCBI)C10orf71    chromosome 10 open reading frame 71
AliasesCEFIP
GeneCards (Weizmann)C10orf71
Ensembl hg19 (Hinxton)ENSG00000177354 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177354 [Gene_View]  ENSG00000177354 [Sequence]  chr10:49299170-49327492 [Contig_View]  C10orf71 [Vega]
ICGC DataPortalENSG00000177354
TCGA cBioPortalC10orf71
AceView (NCBI)C10orf71
Genatlas (Paris)C10orf71
SOURCE (Princeton)C10orf71
Genetics Home Reference (NIH)C10orf71
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf71  -     chr10:49299170-49327492 +  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf71  -     10q11.23   [Description]    (hg19-Feb_2009)
GoldenPathC10orf71 - 10q11.23 [CytoView hg19]  C10orf71 - 10q11.23 [CytoView hg38]
ImmunoBaseENSG00000177354
Genome Data Viewer NCBIC10orf71 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ237663 AJ311357 AJ311358 AK056949 AK127811
RefSeq transcript (Entrez)NM_001135196 NM_199459
Consensus coding sequences : CCDS (NCBI)C10orf71
Gene ExpressionC10orf71 [ NCBI-GEO ]   C10orf71 [ EBI - ARRAY_EXPRESS ]   C10orf71 [ SEEK ]   C10orf71 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf71 [ Firebrowse - Broad ]
GenevisibleExpression of C10orf71 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118461
GTEX Portal (Tissue expression)C10orf71
Human Protein AtlasENSG00000177354-C10orf71 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ711Q0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ711Q0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ711Q0
PhosPhoSitePlusQ711Q0
Domains : Interpro (EBI)DUF4585   
Domain families : Pfam (Sanger)DUF4585 (PF15232)   
Domain families : Pfam (NCBI)pfam15232   
Conserved Domain (NCBI)C10orf71
SuperfamilyQ711Q0
AlphaFold pdb e-kbQ711Q0   
Human Protein Atlas [tissue]ENSG00000177354-C10orf71 [tissue]
HPRD10699
Protein Interaction databases
DIP (DOE-UCLA)Q711Q0
IntAct (EBI)Q711Q0
BioGRIDC10orf71
STRING (EMBL)C10orf71
ZODIACC10orf71
Ontologies - Pathways
QuickGOQ711Q0
Ontology : AmiGOprotein binding  Z disc  positive regulation of calcineurin-NFAT signaling cascade  
Ontology : EGO-EBIprotein binding  Z disc  positive regulation of calcineurin-NFAT signaling cascade  
NDEx NetworkC10orf71
Atlas of Cancer Signalling NetworkC10orf71
Wikipedia pathwaysC10orf71
Orthology - Evolution
OrthoDB118461
GeneTree (enSembl)ENSG00000177354
Phylogenetic Trees/Animal Genes : TreeFamC10orf71
Homologs : HomoloGeneC10orf71
Homology/Alignments : Family Browser (UCSC)C10orf71
Gene fusions - Rearrangements
Fusion : QuiverC10orf71
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf71
dbVarC10orf71
ClinVarC10orf71
MonarchC10orf71
1000_GenomesC10orf71 
Exome Variant ServerC10orf71
GNOMAD BrowserENSG00000177354
Varsome BrowserC10orf71
ACMGC10orf71 variants
VarityQ711Q0
Genomic Variants (DGV)C10orf71 [DGVbeta]
DECIPHERC10orf71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf71 
Mutations
ICGC Data PortalC10orf71 
TCGA Data PortalC10orf71 
Broad Tumor PortalC10orf71
OASIS PortalC10orf71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf71  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC10orf71
Mutations and Diseases : HGMDC10orf71
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC10orf71
DgiDB (Drug Gene Interaction Database)C10orf71
DoCM (Curated mutations)C10orf71
CIViC (Clinical Interpretations of Variants in Cancer)C10orf71
Cancer3DC10orf71
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC10orf71
MedgenC10orf71
Genetic Testing Registry C10orf71
NextProtQ711Q0 [Medical]
GENETestsC10orf71
Target ValidationC10orf71
Huge Navigator C10orf71 [HugePedia]
ClinGenC10orf71
Clinical trials, drugs, therapy
MyCancerGenomeC10orf71
Protein Interactions : CTDC10orf71
Pharm GKB GenePA134920715
PharosQ711Q0
Clinical trialC10orf71
Miscellaneous
canSAR (ICR)C10orf71
HarmonizomeC10orf71
DataMed IndexC10orf71
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC10orf71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:43:42 CEST 2021

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