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C10orf71 (chromosome 10 open reading frame 71)

Identity

Alias_symbol (synonym)FLJ45913
Other alias-
HGNC (Hugo) C10orf71
LocusID (NCBI) 118461
Atlas_Id 60868
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 49299142 and ends at 49327492 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C10orf71 (10q11.23) / C10orf71 (10q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf71   26973
Cards
Entrez_Gene (NCBI)C10orf71  118461  chromosome 10 open reading frame 71
Aliases
GeneCards (Weizmann)C10orf71
Ensembl hg19 (Hinxton)ENSG00000177354 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177354 [Gene_View]  chr10:49299142-49327492 [Contig_View]  C10orf71 [Vega]
ICGC DataPortalENSG00000177354
TCGA cBioPortalC10orf71
AceView (NCBI)C10orf71
Genatlas (Paris)C10orf71
WikiGenes118461
SOURCE (Princeton)C10orf71
Genetics Home Reference (NIH)C10orf71
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf71  -     chr10:49299142-49327492 +  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf71  -     10q11.23   [Description]    (hg19-Feb_2009)
EnsemblC10orf71 - 10q11.23 [CytoView hg19]  C10orf71 - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIC10orf71 [Mapview hg19]  C10orf71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ237663 AJ311357 AJ311358 AK056949 AK127811
RefSeq transcript (Entrez)NM_001135196 NM_199459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf71
Cluster EST : UnigeneHs.585480 [ NCBI ]
CGAP (NCI)Hs.585480
Alternative Splicing GalleryENSG00000177354
Gene ExpressionC10orf71 [ NCBI-GEO ]   C10orf71 [ EBI - ARRAY_EXPRESS ]   C10orf71 [ SEEK ]   C10orf71 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118461
GTEX Portal (Tissue expression)C10orf71
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ711Q0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ711Q0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ711Q0
Splice isoforms : SwissVarQ711Q0
PhosPhoSitePlusQ711Q0
Domains : Interpro (EBI)DUF4585   
Domain families : Pfam (Sanger)DUF4585 (PF15232)   
Domain families : Pfam (NCBI)pfam15232   
Conserved Domain (NCBI)C10orf71
DMDM Disease mutations118461
Blocks (Seattle)C10orf71
SuperfamilyQ711Q0
Human Protein AtlasENSG00000177354
Peptide AtlasQ711Q0
HPRD10699
IPIIPI00427808   IPI00843963   IPI00807694   IPI00386578   
Protein Interaction databases
DIP (DOE-UCLA)Q711Q0
IntAct (EBI)Q711Q0
FunCoupENSG00000177354
BioGRIDC10orf71
STRING (EMBL)C10orf71
ZODIACC10orf71
Ontologies - Pathways
QuickGOQ711Q0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC10orf71
Atlas of Cancer Signalling NetworkC10orf71
Wikipedia pathwaysC10orf71
Orthology - Evolution
OrthoDB118461
GeneTree (enSembl)ENSG00000177354
Phylogenetic Trees/Animal Genes : TreeFamC10orf71
HOVERGENQ711Q0
HOGENOMQ711Q0
Homologs : HomoloGeneC10orf71
Homology/Alignments : Family Browser (UCSC)C10orf71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf71
dbVarC10orf71
ClinVarC10orf71
1000_GenomesC10orf71 
Exome Variant ServerC10orf71
ExAC (Exome Aggregation Consortium)C10orf71 (select the gene name)
Genetic variants : HAPMAP118461
Genomic Variants (DGV)C10orf71 [DGVbeta]
DECIPHERC10orf71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf71 
Mutations
ICGC Data PortalC10orf71 
TCGA Data PortalC10orf71 
Broad Tumor PortalC10orf71
OASIS PortalC10orf71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf71
DgiDB (Drug Gene Interaction Database)C10orf71
DoCM (Curated mutations)C10orf71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf71 (select a term)
intoGenC10orf71
Cancer3DC10orf71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf71
Genetic Testing Registry C10orf71
NextProtQ711Q0 [Medical]
TSGene118461
GENETestsC10orf71
Target ValidationC10orf71
Huge Navigator C10orf71 [HugePedia]
snp3D : Map Gene to Disease118461
BioCentury BCIQC10orf71
ClinGenC10orf71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118461
Chemical/Pharm GKB GenePA134920715
Clinical trialC10orf71
Miscellaneous
canSAR (ICR)C10orf71 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf71
EVEXC10orf71
GoPubMedC10orf71
iHOPC10orf71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:06 CEST 2017

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