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C10orf76 (chromosome 10 open reading frame 76)

Identity

Alias_symbol (synonym)FLJ13114
Other alias-
HGNC (Hugo) C10orf76
LocusID (NCBI) 79591
Atlas_Id 60870
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 101845599 and ends at 102056175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C10orf76 (10q24.32) / KCNIP2 (10q24.32)KCNIP2 (10q24.32) / C10orf76 (10q24.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf76   25788
Cards
Entrez_Gene (NCBI)C10orf76  79591  chromosome 10 open reading frame 76
Aliases
GeneCards (Weizmann)C10orf76
Ensembl hg19 (Hinxton)ENSG00000120029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120029 [Gene_View]  chr10:101845599-102056175 [Contig_View]  C10orf76 [Vega]
ICGC DataPortalENSG00000120029
TCGA cBioPortalC10orf76
AceView (NCBI)C10orf76
Genatlas (Paris)C10orf76
WikiGenes79591
SOURCE (Princeton)C10orf76
Genetics Home Reference (NIH)C10orf76
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf76  -     chr10:101845599-102056175 -  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf76  -     10q24.32   [Description]    (hg19-Feb_2009)
EnsemblC10orf76 - 10q24.32 [CytoView hg19]  C10orf76 - 10q24.32 [CytoView hg38]
Mapping of homologs : NCBIC10orf76 [Mapview hg19]  C10orf76 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023176 AK097972 AK126113 AK308479 AW936405
RefSeq transcript (Entrez)NM_024541
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf76
Cluster EST : UnigeneHs.16004 [ NCBI ]
CGAP (NCI)Hs.16004
Alternative Splicing GalleryENSG00000120029
Gene ExpressionC10orf76 [ NCBI-GEO ]   C10orf76 [ EBI - ARRAY_EXPRESS ]   C10orf76 [ SEEK ]   C10orf76 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf76 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79591
GTEX Portal (Tissue expression)C10orf76
Human Protein AtlasENSG00000120029-C10orf76 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T2E6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T2E6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T2E6
Splice isoforms : SwissVarQ5T2E6
PhosPhoSitePlusQ5T2E6
Domains : Interpro (EBI)ARM-type_fold    DUF1741   
Domain families : Pfam (Sanger)DUF1741 (PF08427)   
Domain families : Pfam (NCBI)pfam08427   
Domain families : Smart (EMBL)DUF1741 (SM01158)  
Conserved Domain (NCBI)C10orf76
DMDM Disease mutations79591
Blocks (Seattle)C10orf76
SuperfamilyQ5T2E6
Human Protein Atlas [tissue]ENSG00000120029-C10orf76 [tissue]
Peptide AtlasQ5T2E6
HPRD12588
IPIIPI00646323   IPI00843920   IPI00844372   IPI00375664   IPI00647872   
Protein Interaction databases
DIP (DOE-UCLA)Q5T2E6
IntAct (EBI)Q5T2E6
FunCoupENSG00000120029
BioGRIDC10orf76
STRING (EMBL)C10orf76
ZODIACC10orf76
Ontologies - Pathways
QuickGOQ5T2E6
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkC10orf76
Atlas of Cancer Signalling NetworkC10orf76
Wikipedia pathwaysC10orf76
Orthology - Evolution
OrthoDB79591
GeneTree (enSembl)ENSG00000120029
Phylogenetic Trees/Animal Genes : TreeFamC10orf76
HOVERGENQ5T2E6
HOGENOMQ5T2E6
Homologs : HomoloGeneC10orf76
Homology/Alignments : Family Browser (UCSC)C10orf76
Gene fusions - Rearrangements
Fusion: Tumor Portal C10orf76
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf76 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf76
dbVarC10orf76
ClinVarC10orf76
1000_GenomesC10orf76 
Exome Variant ServerC10orf76
ExAC (Exome Aggregation Consortium)ENSG00000120029
GNOMAD BrowserENSG00000120029
Genetic variants : HAPMAP79591
Genomic Variants (DGV)C10orf76 [DGVbeta]
DECIPHERC10orf76 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf76 
Mutations
ICGC Data PortalC10orf76 
TCGA Data PortalC10orf76 
Broad Tumor PortalC10orf76
OASIS PortalC10orf76 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf76  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf76
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf76
DgiDB (Drug Gene Interaction Database)C10orf76
DoCM (Curated mutations)C10orf76 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf76 (select a term)
intoGenC10orf76
Cancer3DC10orf76(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf76
Genetic Testing Registry C10orf76
NextProtQ5T2E6 [Medical]
TSGene79591
GENETestsC10orf76
Target ValidationC10orf76
Huge Navigator C10orf76 [HugePedia]
snp3D : Map Gene to Disease79591
BioCentury BCIQC10orf76
ClinGenC10orf76
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79591
Chemical/Pharm GKB GenePA134903060
Clinical trialC10orf76
Miscellaneous
canSAR (ICR)C10orf76 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf76
EVEXC10orf76
GoPubMedC10orf76
iHOPC10orf76
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:39:29 CET 2017

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