Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf82 (chromosome 10 open reading frame 82)

Identity

Alias_symbol (synonym)MGC33547
Em:AC016825.4
Other alias-
HGNC (Hugo) C10orf82
LocusID (NCBI) 143379
Atlas_Id 60871
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 116663696 and ends at 116670272 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLPP4 (10q26.12) / C10orf82 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf82   28500
Cards
Entrez_Gene (NCBI)C10orf82  143379  chromosome 10 open reading frame 82
Aliases
GeneCards (Weizmann)C10orf82
Ensembl hg19 (Hinxton)ENSG00000165863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165863 [Gene_View]  chr10:116663696-116670272 [Contig_View]  C10orf82 [Vega]
ICGC DataPortalENSG00000165863
TCGA cBioPortalC10orf82
AceView (NCBI)C10orf82
Genatlas (Paris)C10orf82
WikiGenes143379
SOURCE (Princeton)C10orf82
Genetics Home Reference (NIH)C10orf82
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf82  -     chr10:116663696-116670272 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf82  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblC10orf82 - 10q25.3 [CytoView hg19]  C10orf82 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBIC10orf82 [Mapview hg19]  C10orf82 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI218030 AI797771 AK097587 BC021737 BX106852
RefSeq transcript (Entrez)NM_001330142 NM_001350930 NM_001350931 NM_144661
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf82
Cluster EST : UnigeneHs.733792 [ NCBI ]
CGAP (NCI)Hs.733792
Alternative Splicing GalleryENSG00000165863
Gene ExpressionC10orf82 [ NCBI-GEO ]   C10orf82 [ EBI - ARRAY_EXPRESS ]   C10orf82 [ SEEK ]   C10orf82 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf82 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143379
GTEX Portal (Tissue expression)C10orf82
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW14   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW14  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW14
Splice isoforms : SwissVarQ8WW14
PhosPhoSitePlusQ8WW14
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf82
DMDM Disease mutations143379
Blocks (Seattle)C10orf82
SuperfamilyQ8WW14
Human Protein AtlasENSG00000165863
Peptide AtlasQ8WW14
HPRD12592
IPIIPI00784191   IPI00143752   IPI00902902   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW14
IntAct (EBI)Q8WW14
FunCoupENSG00000165863
BioGRIDC10orf82
STRING (EMBL)C10orf82
ZODIACC10orf82
Ontologies - Pathways
QuickGOQ8WW14
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC10orf82
Atlas of Cancer Signalling NetworkC10orf82
Wikipedia pathwaysC10orf82
Orthology - Evolution
OrthoDB143379
GeneTree (enSembl)ENSG00000165863
Phylogenetic Trees/Animal Genes : TreeFamC10orf82
HOVERGENQ8WW14
HOGENOMQ8WW14
Homologs : HomoloGeneC10orf82
Homology/Alignments : Family Browser (UCSC)C10orf82
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf82
dbVarC10orf82
ClinVarC10orf82
1000_GenomesC10orf82 
Exome Variant ServerC10orf82
ExAC (Exome Aggregation Consortium)C10orf82 (select the gene name)
Genetic variants : HAPMAP143379
Genomic Variants (DGV)C10orf82 [DGVbeta]
DECIPHERC10orf82 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf82 
Mutations
ICGC Data PortalC10orf82 
TCGA Data PortalC10orf82 
Broad Tumor PortalC10orf82
OASIS PortalC10orf82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf82  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf82
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf82
DgiDB (Drug Gene Interaction Database)C10orf82
DoCM (Curated mutations)C10orf82 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf82 (select a term)
intoGenC10orf82
Cancer3DC10orf82(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf82
Genetic Testing Registry C10orf82
NextProtQ8WW14 [Medical]
TSGene143379
GENETestsC10orf82
Target ValidationC10orf82
Huge Navigator C10orf82 [HugePedia]
snp3D : Map Gene to Disease143379
BioCentury BCIQC10orf82
ClinGenC10orf82
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143379
Chemical/Pharm GKB GenePA134919914
Clinical trialC10orf82
Miscellaneous
canSAR (ICR)C10orf82 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf82
EVEXC10orf82
GoPubMedC10orf82
iHOPC10orf82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:07 CEST 2017

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