Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf82 (chromosome 10 open reading frame 82)

Identity

Alias (NCBI)-
HGNC (Hugo) C10orf82
HGNC Alias symbMGC33547
Em:AC016825.4
LocusID (NCBI) 143379
Atlas_Id 60871
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 116663696 and ends at 116669966 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLPP4 (10q26.12) / C10orf82 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C10orf82   28500
Cards
Entrez_Gene (NCBI)C10orf82    chromosome 10 open reading frame 82
Aliases
GeneCards (Weizmann)C10orf82
Ensembl hg19 (Hinxton)ENSG00000165863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165863 [Gene_View]  ENSG00000165863 [Sequence]  chr10:116663696-116669966 [Contig_View]  C10orf82 [Vega]
ICGC DataPortalENSG00000165863
TCGA cBioPortalC10orf82
AceView (NCBI)C10orf82
Genatlas (Paris)C10orf82
SOURCE (Princeton)C10orf82
Genetics Home Reference (NIH)C10orf82
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf82  -     chr10:116663696-116669966 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf82  -     10q25.3   [Description]    (hg19-Feb_2009)
GoldenPathC10orf82 - 10q25.3 [CytoView hg19]  C10orf82 - 10q25.3 [CytoView hg38]
ImmunoBaseENSG00000165863
Genome Data Viewer NCBIC10orf82 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI218030 AI797771 AK097587 BC021737 BX106852
RefSeq transcript (Entrez)NM_001330142 NM_001350930 NM_001350931 NM_144661
Consensus coding sequences : CCDS (NCBI)C10orf82
Gene ExpressionC10orf82 [ NCBI-GEO ]   C10orf82 [ EBI - ARRAY_EXPRESS ]   C10orf82 [ SEEK ]   C10orf82 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf82 [ Firebrowse - Broad ]
GenevisibleExpression of C10orf82 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143379
GTEX Portal (Tissue expression)C10orf82
Human Protein AtlasENSG00000165863-C10orf82 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW14   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW14  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW14
PhosPhoSitePlusQ8WW14
Domains : Interpro (EBI)C10orf82-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf82
SuperfamilyQ8WW14
AlphaFold pdb e-kbQ8WW14   
Human Protein Atlas [tissue]ENSG00000165863-C10orf82 [tissue]
HPRD12592
Protein Interaction databases
DIP (DOE-UCLA)Q8WW14
IntAct (EBI)Q8WW14
BioGRIDC10orf82
STRING (EMBL)C10orf82
ZODIACC10orf82
Ontologies - Pathways
QuickGOQ8WW14
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC10orf82
Atlas of Cancer Signalling NetworkC10orf82
Wikipedia pathwaysC10orf82
Orthology - Evolution
OrthoDB143379
GeneTree (enSembl)ENSG00000165863
Phylogenetic Trees/Animal Genes : TreeFamC10orf82
Homologs : HomoloGeneC10orf82
Homology/Alignments : Family Browser (UCSC)C10orf82
Gene fusions - Rearrangements
Fusion : QuiverC10orf82
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf82
dbVarC10orf82
ClinVarC10orf82
MonarchC10orf82
1000_GenomesC10orf82 
Exome Variant ServerC10orf82
GNOMAD BrowserENSG00000165863
Varsome BrowserC10orf82
ACMGC10orf82 variants
VarityQ8WW14
Genomic Variants (DGV)C10orf82 [DGVbeta]
DECIPHERC10orf82 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf82 
Mutations
ICGC Data PortalC10orf82 
TCGA Data PortalC10orf82 
Broad Tumor PortalC10orf82
OASIS PortalC10orf82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf82  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC10orf82
Mutations and Diseases : HGMDC10orf82
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC10orf82
DgiDB (Drug Gene Interaction Database)C10orf82
DoCM (Curated mutations)C10orf82
CIViC (Clinical Interpretations of Variants in Cancer)C10orf82
Cancer3DC10orf82
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC10orf82
MedgenC10orf82
Genetic Testing Registry C10orf82
NextProtQ8WW14 [Medical]
GENETestsC10orf82
Target ValidationC10orf82
Huge Navigator C10orf82 [HugePedia]
ClinGenC10orf82
Clinical trials, drugs, therapy
MyCancerGenomeC10orf82
Protein Interactions : CTDC10orf82
Pharm GKB GenePA134919914
PharosQ8WW14
Clinical trialC10orf82
Miscellaneous
canSAR (ICR)C10orf82
HarmonizomeC10orf82
DataMed IndexC10orf82
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC10orf82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:43:42 CEST 2021

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