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C10orf88 (chromosome 10 open reading frame 88)

Identity

Alias_symbol (synonym)FLJ13490
Em:AC073585.5
Other alias-
HGNC (Hugo) C10orf88
LocusID (NCBI) 80007
Atlas_Id 60872
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 122930903 and ends at 122954403 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C10orf88 (10q26.13) / CMC2 (16q23.2)C10orf88 (10q26.13) / PLPP4 (10q26.12)C10orf88 (10q26.13) / PSTK (10q26.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf88   25822
Cards
Entrez_Gene (NCBI)C10orf88  80007  chromosome 10 open reading frame 88
Aliases
GeneCards (Weizmann)C10orf88
Ensembl hg19 (Hinxton)ENSG00000119965 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119965 [Gene_View]  chr10:122930903-122954403 [Contig_View]  C10orf88 [Vega]
ICGC DataPortalENSG00000119965
TCGA cBioPortalC10orf88
AceView (NCBI)C10orf88
Genatlas (Paris)C10orf88
WikiGenes80007
SOURCE (Princeton)C10orf88
Genetics Home Reference (NIH)C10orf88
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf88  -     chr10:122930903-122954403 -  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf88  -     10q26.13   [Description]    (hg19-Feb_2009)
EnsemblC10orf88 - 10q26.13 [CytoView hg19]  C10orf88 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBIC10orf88 [Mapview hg19]  C10orf88 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023552 BC021705 BC032645 BI821345 CB044034
RefSeq transcript (Entrez)NM_024942
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf88
Cluster EST : UnigeneHs.501286 [ NCBI ]
CGAP (NCI)Hs.501286
Alternative Splicing GalleryENSG00000119965
Gene ExpressionC10orf88 [ NCBI-GEO ]   C10orf88 [ EBI - ARRAY_EXPRESS ]   C10orf88 [ SEEK ]   C10orf88 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf88 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80007
GTEX Portal (Tissue expression)C10orf88
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8K7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8K7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8K7
Splice isoforms : SwissVarQ9H8K7
PhosPhoSitePlusQ9H8K7
Domaine pattern : Prosite (Expaxy)ABC_TRANSPORTER_1 (PS00211)   
Domains : Interpro (EBI)DUF4506   
Domain families : Pfam (Sanger)DUF4506 (PF14958)   
Domain families : Pfam (NCBI)pfam14958   
Conserved Domain (NCBI)C10orf88
DMDM Disease mutations80007
Blocks (Seattle)C10orf88
SuperfamilyQ9H8K7
Human Protein AtlasENSG00000119965
Peptide AtlasQ9H8K7
HPRD18531
IPIIPI00783299   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8K7
IntAct (EBI)Q9H8K7
FunCoupENSG00000119965
BioGRIDC10orf88
STRING (EMBL)C10orf88
ZODIACC10orf88
Ontologies - Pathways
QuickGOQ9H8K7
Ontology : AmiGOidentical protein binding  
Ontology : EGO-EBIidentical protein binding  
NDEx NetworkC10orf88
Atlas of Cancer Signalling NetworkC10orf88
Wikipedia pathwaysC10orf88
Orthology - Evolution
OrthoDB80007
GeneTree (enSembl)ENSG00000119965
Phylogenetic Trees/Animal Genes : TreeFamC10orf88
HOVERGENQ9H8K7
HOGENOMQ9H8K7
Homologs : HomoloGeneC10orf88
Homology/Alignments : Family Browser (UCSC)C10orf88
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf88 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf88
dbVarC10orf88
ClinVarC10orf88
1000_GenomesC10orf88 
Exome Variant ServerC10orf88
ExAC (Exome Aggregation Consortium)C10orf88 (select the gene name)
Genetic variants : HAPMAP80007
Genomic Variants (DGV)C10orf88 [DGVbeta]
DECIPHERC10orf88 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf88 
Mutations
ICGC Data PortalC10orf88 
TCGA Data PortalC10orf88 
Broad Tumor PortalC10orf88
OASIS PortalC10orf88 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf88  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf88
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf88
DgiDB (Drug Gene Interaction Database)C10orf88
DoCM (Curated mutations)C10orf88 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf88 (select a term)
intoGenC10orf88
Cancer3DC10orf88(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf88
Genetic Testing Registry C10orf88
NextProtQ9H8K7 [Medical]
TSGene80007
GENETestsC10orf88
Target ValidationC10orf88
Huge Navigator C10orf88 [HugePedia]
snp3D : Map Gene to Disease80007
BioCentury BCIQC10orf88
ClinGenC10orf88
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80007
Chemical/Pharm GKB GenePA134993933
Clinical trialC10orf88
Miscellaneous
canSAR (ICR)C10orf88 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf88
EVEXC10orf88
GoPubMedC10orf88
iHOPC10orf88
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:37 CEST 2017

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