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C10orf90 (chromosome 10 open reading frame 90)

Identity

Alias_symbol (synonym)FLJ32938
bA422P15.2
FATS
Other alias
HGNC (Hugo) C10orf90
LocusID (NCBI) 118611
Atlas_Id 52693
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 128113574 and ends at 128210010 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FOCAD (9p21.3) / C10orf90 (10q26.2)SMAD2 (18q21.1) / C10orf90 (10q26.2)VTI1A (10q25.2) / C10orf90 (10q26.2)
KIAA1797 C10orf90 10q26.2SMAD2 18q21.1 / C10orf90 10q26.2VTI1A 10q25.2 / C10orf90 10q26.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf90   26563
Cards
Entrez_Gene (NCBI)C10orf90  118611  chromosome 10 open reading frame 90
AliasesFATS; bA422P15.2
GeneCards (Weizmann)C10orf90
Ensembl hg19 (Hinxton)ENSG00000154493 [Gene_View]  chr10:128113574-128210010 [Contig_View]  C10orf90 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154493 [Gene_View]  chr10:128113574-128210010 [Contig_View]  C10orf90 [Vega]
ICGC DataPortalENSG00000154493
TCGA cBioPortalC10orf90
AceView (NCBI)C10orf90
Genatlas (Paris)C10orf90
WikiGenes118611
SOURCE (Princeton)C10orf90
Genetics Home Reference (NIH)C10orf90
Genomic and cartography
GoldenPath hg19 (UCSC)C10orf90  -     chr10:128113574-128210010 -  10q26.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C10orf90  -     10q26.2   [Description]    (hg38-Dec_2013)
EnsemblC10orf90 - 10q26.2 [CytoView hg19]  C10orf90 - 10q26.2 [CytoView hg38]
Mapping of homologs : NCBIC10orf90 [Mapview hg19]  C10orf90 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF435960 AK057500 AK093093 AK297577 AK308357
RefSeq transcript (Entrez)NM_001004298
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)C10orf90
Cluster EST : UnigeneHs.587663 [ NCBI ]
CGAP (NCI)Hs.587663
Alternative Splicing GalleryENSG00000154493
Gene ExpressionC10orf90 [ NCBI-GEO ]   C10orf90 [ EBI - ARRAY_EXPRESS ]   C10orf90 [ SEEK ]   C10orf90 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf90 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118611
GTEX Portal (Tissue expression)C10orf90
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M02
Splice isoforms : SwissVarQ96M02
PhosPhoSitePlusQ96M02
Domains : Interpro (EBI)ALMS_motif    C10orf90   
Domain families : Pfam (Sanger)ALMS_motif (PF15309)   
Domain families : Pfam (NCBI)pfam15309   
Conserved Domain (NCBI)C10orf90
DMDM Disease mutations118611
Blocks (Seattle)C10orf90
SuperfamilyQ96M02
Human Protein AtlasENSG00000154493
Peptide AtlasQ96M02
HPRD16587
IPIIPI01014878   IPI00478857   IPI00465461   IPI00646818   
Protein Interaction databases
DIP (DOE-UCLA)Q96M02
IntAct (EBI)Q96M02
FunCoupENSG00000154493
BioGRIDC10orf90
STRING (EMBL)C10orf90
ZODIACC10orf90
Ontologies - Pathways
QuickGOQ96M02
Ontology : AmiGOcytoplasm  centrosome  actin cytoskeleton  
Ontology : EGO-EBIcytoplasm  centrosome  actin cytoskeleton  
NDEx NetworkC10orf90
Atlas of Cancer Signalling NetworkC10orf90
Wikipedia pathwaysC10orf90
Orthology - Evolution
OrthoDB118611
GeneTree (enSembl)ENSG00000154493
Phylogenetic Trees/Animal Genes : TreeFamC10orf90
HOVERGENQ96M02
HOGENOMQ96M02
Homologs : HomoloGeneC10orf90
Homology/Alignments : Family Browser (UCSC)C10orf90
Gene fusions - Rearrangements
Fusion : MitelmanFOCAD/C10orf90 [9p21.3/10q26.2]  [t(9;10)(p21;q26)]  
Fusion : MitelmanSMAD2/C10orf90 [18q21.1/10q26.2]  [t(10;18)(q26;q21)]  
Fusion : MitelmanVTI1A/C10orf90 [10q25.2/10q26.2]  [t(10;10)(q25;q26)]  
Fusion: TCGAKIAA1797 C10orf90 10q26.2 PRAD
Fusion: TCGASMAD2 18q21.1 C10orf90 10q26.2 LUAD
Fusion: TCGAVTI1A 10q25.2 C10orf90 10q26.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf90 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf90
dbVarC10orf90
ClinVarC10orf90
1000_GenomesC10orf90 
Exome Variant ServerC10orf90
ExAC (Exome Aggregation Consortium)C10orf90 (select the gene name)
Genetic variants : HAPMAP118611
Genomic Variants (DGV)C10orf90 [DGVbeta]
DECIPHER (Syndromes)10:128113574-128210010  ENSG00000154493
CONAN: Copy Number AnalysisC10orf90 
Mutations
ICGC Data PortalC10orf90 
TCGA Data PortalC10orf90 
Broad Tumor PortalC10orf90
OASIS PortalC10orf90 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf90  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf90
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf90
DgiDB (Drug Gene Interaction Database)C10orf90
DoCM (Curated mutations)C10orf90 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf90 (select a term)
intoGenC10orf90
Cancer3DC10orf90(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf90
Genetic Testing Registry C10orf90
NextProtQ96M02 [Medical]
TSGene118611
GENETestsC10orf90
Huge Navigator C10orf90 [HugePedia]
snp3D : Map Gene to Disease118611
BioCentury BCIQC10orf90
ClinGenC10orf90
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118611
Chemical/Pharm GKB GenePA134895930
Clinical trialC10orf90
Miscellaneous
canSAR (ICR)C10orf90 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf90
EVEXC10orf90
GoPubMedC10orf90
iHOPC10orf90
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:54:23 CEST 2017

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