Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C10orf91 (chromosome 10 open reading frame 91)

Identity

Alias_symbol (synonym)bA432J24.4
Other alias
HGNC (Hugo) C10orf91
LocusID (NCBI) 170393
Atlas_Id 60873
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 132445210 and ends at 132448321 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
INPP5A (10q26.3) / C10orf91 (10q26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf91   27275
Cards
Entrez_Gene (NCBI)C10orf91  170393  chromosome 10 open reading frame 91
AliasesbA432J24.4
GeneCards (Weizmann)C10orf91
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:132445210-132448321 [Contig_View]  C10orf91 [Vega]
TCGA cBioPortalC10orf91
AceView (NCBI)C10orf91
Genatlas (Paris)C10orf91
WikiGenes170393
SOURCE (Princeton)C10orf91
Genetics Home Reference (NIH)C10orf91
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf91  -     chr10:132445210-132448321 +  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf91  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblC10orf91 - 10q26.3 [CytoView hg19]  C10orf91 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBIC10orf91 [Mapview hg19]  C10orf91 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030794 BE909428 HQ448320
RefSeq transcript (Entrez)NM_173541
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf91
Cluster EST : UnigeneHs.375059 [ NCBI ]
CGAP (NCI)Hs.375059
Gene ExpressionC10orf91 [ NCBI-GEO ]   C10orf91 [ EBI - ARRAY_EXPRESS ]   C10orf91 [ SEEK ]   C10orf91 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf91 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170393
GTEX Portal (Tissue expression)C10orf91
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T1B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T1B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T1B1
Splice isoforms : SwissVarQ5T1B1
PhosPhoSitePlusQ5T1B1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C10orf91
DMDM Disease mutations170393
Blocks (Seattle)C10orf91
SuperfamilyQ5T1B1
Peptide AtlasQ5T1B1
HPRD12557
IPIIPI00166064   
Protein Interaction databases
DIP (DOE-UCLA)Q5T1B1
IntAct (EBI)Q5T1B1
BioGRIDC10orf91
STRING (EMBL)C10orf91
ZODIACC10orf91
Ontologies - Pathways
QuickGOQ5T1B1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC10orf91
Atlas of Cancer Signalling NetworkC10orf91
Wikipedia pathwaysC10orf91
Orthology - Evolution
OrthoDB170393
Phylogenetic Trees/Animal Genes : TreeFamC10orf91
HOVERGENQ5T1B1
HOGENOMQ5T1B1
Homologs : HomoloGeneC10orf91
Homology/Alignments : Family Browser (UCSC)C10orf91
Gene fusions - Rearrangements
Fusion: Tumor Portal C10orf91
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf91 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf91
dbVarC10orf91
ClinVarC10orf91
1000_GenomesC10orf91 
Exome Variant ServerC10orf91
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP170393
Genomic Variants (DGV)C10orf91 [DGVbeta]
DECIPHERC10orf91 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf91 
Mutations
ICGC Data PortalC10orf91 
TCGA Data PortalC10orf91 
Broad Tumor PortalC10orf91
OASIS PortalC10orf91 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf91  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf91
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf91
DgiDB (Drug Gene Interaction Database)C10orf91
DoCM (Curated mutations)C10orf91 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf91 (select a term)
intoGenC10orf91
Cancer3DC10orf91(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf91
Genetic Testing Registry C10orf91
NextProtQ5T1B1 [Medical]
TSGene170393
GENETestsC10orf91
Target ValidationC10orf91
Huge Navigator C10orf91 [HugePedia]
snp3D : Map Gene to Disease170393
BioCentury BCIQC10orf91
ClinGenC10orf91
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170393
Chemical/Pharm GKB GenePA134926670
Clinical trialC10orf91
Miscellaneous
canSAR (ICR)C10orf91 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf91
EVEXC10orf91
GoPubMedC10orf91
iHOPC10orf91
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:29 CET 2017

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