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C10orf99 (chromosome 10 open reading frame 99)

Identity

Alias (NCBI)AP-57
AP57
CSBF
GPR15L
UNQ1833
HGNC (Hugo) C10orf99
HGNC Alias symbUNQ1833
RLLV1833
FLJ21763
CSBF
AP-57
HGNC Alias namecolon-derived SUSD2 binding factor
 anti-microbial peptide with 57 amino acid residues
LocusID (NCBI) 387695
Atlas_Id 60875
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84173801 and ends at 84185294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C10orf99 (10q23.1) / UGGT1 (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C10orf99   31428
Cards
Entrez_Gene (NCBI)C10orf99    chromosome 10 open reading frame 99
AliasesAP-57; AP57; CSBF; GPR15L; 
UNQ1833
GeneCards (Weizmann)C10orf99
Ensembl hg19 (Hinxton)ENSG00000188373 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188373 [Gene_View]  ENSG00000188373 [Sequence]  chr10:84173801-84185294 [Contig_View]  C10orf99 [Vega]
ICGC DataPortalENSG00000188373
TCGA cBioPortalC10orf99
AceView (NCBI)C10orf99
Genatlas (Paris)C10orf99
SOURCE (Princeton)C10orf99
Genetics Home Reference (NIH)C10orf99
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf99  -     chr10:84173801-84185294 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf99  -     10q23.1   [Description]    (hg19-Feb_2009)
GoldenPathC10orf99 - 10q23.1 [CytoView hg19]  C10orf99 - 10q23.1 [CytoView hg38]
ImmunoBaseENSG00000188373
Genome Data Viewer NCBIC10orf99 [Mapview hg19]  
OMIM617775   
Gene and transcription
Genbank (Entrez)AI831407 AW351839 AY358751
RefSeq transcript (Entrez)NM_207373
Consensus coding sequences : CCDS (NCBI)C10orf99
Gene ExpressionC10orf99 [ NCBI-GEO ]   C10orf99 [ EBI - ARRAY_EXPRESS ]   C10orf99 [ SEEK ]   C10orf99 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf99 [ Firebrowse - Broad ]
GenevisibleExpression of C10orf99 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387695
GTEX Portal (Tissue expression)C10orf99
Human Protein AtlasENSG00000188373-C10orf99 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWK7
PhosPhoSitePlusQ6UWK7
Domains : Interpro (EBI)GPR15L   
Domain families : Pfam (Sanger)GPR15L (PF15854)   
Domain families : Pfam (NCBI)pfam15854   
Conserved Domain (NCBI)C10orf99
SuperfamilyQ6UWK7
AlphaFold pdb e-kbQ6UWK7   
Human Protein Atlas [tissue]ENSG00000188373-C10orf99 [tissue]
HPRD12599
Protein Interaction databases
DIP (DOE-UCLA)Q6UWK7
IntAct (EBI)Q6UWK7
BioGRIDC10orf99
STRING (EMBL)C10orf99
ZODIACC10orf99
Ontologies - Pathways
QuickGOQ6UWK7
Ontology : AmiGOG protein-coupled receptor binding  protein binding  extracellular region  extracellular space  G protein-coupled receptor signaling pathway  chemokine activity  receptor ligand activity  lymphocyte chemotaxis  defense response to Gram-positive bacterium  defense response to fungus  negative regulation of cell division  negative regulation of cell cycle G1/S phase transition  regulation of T cell migration  
Ontology : EGO-EBIG protein-coupled receptor binding  protein binding  extracellular region  extracellular space  G protein-coupled receptor signaling pathway  chemokine activity  receptor ligand activity  lymphocyte chemotaxis  defense response to Gram-positive bacterium  defense response to fungus  negative regulation of cell division  negative regulation of cell cycle G1/S phase transition  regulation of T cell migration  
NDEx NetworkC10orf99
Atlas of Cancer Signalling NetworkC10orf99
Wikipedia pathwaysC10orf99
Orthology - Evolution
OrthoDB387695
GeneTree (enSembl)ENSG00000188373
Phylogenetic Trees/Animal Genes : TreeFamC10orf99
Homologs : HomoloGeneC10orf99
Homology/Alignments : Family Browser (UCSC)C10orf99
Gene fusions - Rearrangements
Fusion : QuiverC10orf99
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf99 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf99
dbVarC10orf99
ClinVarC10orf99
MonarchC10orf99
1000_GenomesC10orf99 
Exome Variant ServerC10orf99
GNOMAD BrowserENSG00000188373
Varsome BrowserC10orf99
ACMGC10orf99 variants
VarityQ6UWK7
Genomic Variants (DGV)C10orf99 [DGVbeta]
DECIPHERC10orf99 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf99 
Mutations
ICGC Data PortalC10orf99 
TCGA Data PortalC10orf99 
Broad Tumor PortalC10orf99
OASIS PortalC10orf99 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf99  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC10orf99
Mutations and Diseases : HGMDC10orf99
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC10orf99
DgiDB (Drug Gene Interaction Database)C10orf99
DoCM (Curated mutations)C10orf99
CIViC (Clinical Interpretations of Variants in Cancer)C10orf99
Cancer3DC10orf99
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617775   
Orphanet
DisGeNETC10orf99
MedgenC10orf99
Genetic Testing Registry C10orf99
NextProtQ6UWK7 [Medical]
GENETestsC10orf99
Target ValidationC10orf99
Huge Navigator C10orf99 [HugePedia]
ClinGenC10orf99
Clinical trials, drugs, therapy
MyCancerGenomeC10orf99
Protein Interactions : CTDC10orf99
Pharm GKB GenePA134990747
PharosQ6UWK7
Clinical trialC10orf99
Miscellaneous
canSAR (ICR)C10orf99
HarmonizomeC10orf99
DataMed IndexC10orf99
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC10orf99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:43 CEST 2021

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