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C10orf99 (chromosome 10 open reading frame 99)

Identity

Alias_symbol (synonym)UNQ1833
RLLV1833
FLJ21763
CSBF
AP-57
Other alias
HGNC (Hugo) C10orf99
LocusID (NCBI) 387695
Atlas_Id 60875
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84173798 and ends at 84185294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C10orf99 (10q23.1) / UGGT1 (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C10orf99   31428
Cards
Entrez_Gene (NCBI)C10orf99  387695  chromosome 10 open reading frame 99
AliasesAP-57; CSBF; UNQ1833
GeneCards (Weizmann)C10orf99
Ensembl hg19 (Hinxton)ENSG00000188373 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188373 [Gene_View]  chr10:84173798-84185294 [Contig_View]  C10orf99 [Vega]
ICGC DataPortalENSG00000188373
TCGA cBioPortalC10orf99
AceView (NCBI)C10orf99
Genatlas (Paris)C10orf99
WikiGenes387695
SOURCE (Princeton)C10orf99
Genetics Home Reference (NIH)C10orf99
Genomic and cartography
GoldenPath hg38 (UCSC)C10orf99  -     chr10:84173798-84185294 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C10orf99  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblC10orf99 - 10q23.1 [CytoView hg19]  C10orf99 - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBIC10orf99 [Mapview hg19]  C10orf99 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI831407 AW351839 AY358751 BC024215
RefSeq transcript (Entrez)NM_207373
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C10orf99
Cluster EST : UnigeneHs.499145 [ NCBI ]
CGAP (NCI)Hs.499145
Alternative Splicing GalleryENSG00000188373
Gene ExpressionC10orf99 [ NCBI-GEO ]   C10orf99 [ EBI - ARRAY_EXPRESS ]   C10orf99 [ SEEK ]   C10orf99 [ MEM ]
Gene Expression Viewer (FireBrowse)C10orf99 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387695
GTEX Portal (Tissue expression)C10orf99
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWK7
Splice isoforms : SwissVarQ6UWK7
PhosPhoSitePlusQ6UWK7
Domains : Interpro (EBI)DUF4725   
Domain families : Pfam (Sanger)DUF4725 (PF15854)   
Domain families : Pfam (NCBI)pfam15854   
Conserved Domain (NCBI)C10orf99
DMDM Disease mutations387695
Blocks (Seattle)C10orf99
SuperfamilyQ6UWK7
Human Protein AtlasENSG00000188373
Peptide AtlasQ6UWK7
HPRD12599
IPIIPI00410444   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWK7
IntAct (EBI)Q6UWK7
FunCoupENSG00000188373
BioGRIDC10orf99
STRING (EMBL)C10orf99
ZODIACC10orf99
Ontologies - Pathways
QuickGOQ6UWK7
Ontology : AmiGOcytokine activity  extracellular region  extracellular space  defense response to Gram-positive bacterium  defense response to fungus  negative regulation of cell division  negative regulation of cell cycle G1/S phase transition  
Ontology : EGO-EBIcytokine activity  extracellular region  extracellular space  defense response to Gram-positive bacterium  defense response to fungus  negative regulation of cell division  negative regulation of cell cycle G1/S phase transition  
NDEx NetworkC10orf99
Atlas of Cancer Signalling NetworkC10orf99
Wikipedia pathwaysC10orf99
Orthology - Evolution
OrthoDB387695
GeneTree (enSembl)ENSG00000188373
Phylogenetic Trees/Animal Genes : TreeFamC10orf99
HOVERGENQ6UWK7
HOGENOMQ6UWK7
Homologs : HomoloGeneC10orf99
Homology/Alignments : Family Browser (UCSC)C10orf99
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC10orf99 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C10orf99
dbVarC10orf99
ClinVarC10orf99
1000_GenomesC10orf99 
Exome Variant ServerC10orf99
ExAC (Exome Aggregation Consortium)C10orf99 (select the gene name)
Genetic variants : HAPMAP387695
Genomic Variants (DGV)C10orf99 [DGVbeta]
DECIPHERC10orf99 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC10orf99 
Mutations
ICGC Data PortalC10orf99 
TCGA Data PortalC10orf99 
Broad Tumor PortalC10orf99
OASIS PortalC10orf99 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC10orf99  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC10orf99
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C10orf99
DgiDB (Drug Gene Interaction Database)C10orf99
DoCM (Curated mutations)C10orf99 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C10orf99 (select a term)
intoGenC10orf99
Cancer3DC10orf99(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC10orf99
Genetic Testing Registry C10orf99
NextProtQ6UWK7 [Medical]
TSGene387695
GENETestsC10orf99
Target ValidationC10orf99
Huge Navigator C10orf99 [HugePedia]
snp3D : Map Gene to Disease387695
BioCentury BCIQC10orf99
ClinGenC10orf99
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387695
Chemical/Pharm GKB GenePA134990747
Clinical trialC10orf99
Miscellaneous
canSAR (ICR)C10orf99 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC10orf99
EVEXC10orf99
GoPubMedC10orf99
iHOPC10orf99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:37 CEST 2017

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