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C11orf1 (chromosome 11 open reading frame 1)

Identity

Alias_symbol (synonym)FLJ23499
Other alias-
HGNC (Hugo) C11orf1
LocusID (NCBI) 64776
Atlas_Id 54161
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111749948 and ends at 111754797 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SIK3 (11q23.3) / C11orf1 (11q23.1)SIK3 11q23.3 / C11orf1 11q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf1   1163
Cards
Entrez_Gene (NCBI)C11orf1  64776  chromosome 11 open reading frame 1
Aliases
GeneCards (Weizmann)C11orf1
Ensembl hg19 (Hinxton)ENSG00000137720 [Gene_View]  chr11:111749948-111754797 [Contig_View]  C11orf1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137720 [Gene_View]  chr11:111749948-111754797 [Contig_View]  C11orf1 [Vega]
ICGC DataPortalENSG00000137720
TCGA cBioPortalC11orf1
AceView (NCBI)C11orf1
Genatlas (Paris)C11orf1
WikiGenes64776
SOURCE (Princeton)C11orf1
Genetics Home Reference (NIH)C11orf1
Genomic and cartography
GoldenPath hg19 (UCSC)C11orf1  -     chr11:111749948-111754797 +  11q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C11orf1  -     11q23.1   [Description]    (hg38-Dec_2013)
EnsemblC11orf1 - 11q23.1 [CytoView hg19]  C11orf1 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf1 [Mapview hg19]  C11orf1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ250229 AK027152 BC020628 BC036892 CR457378
RefSeq transcript (Entrez)NM_022761
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_029081 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)C11orf1
Cluster EST : UnigeneHs.17546 [ NCBI ]
CGAP (NCI)Hs.17546
Alternative Splicing GalleryENSG00000137720
Gene ExpressionC11orf1 [ NCBI-GEO ]   C11orf1 [ EBI - ARRAY_EXPRESS ]   C11orf1 [ SEEK ]   C11orf1 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64776
GTEX Portal (Tissue expression)C11orf1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5F2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5F2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5F2
Splice isoforms : SwissVarQ9H5F2
PhosPhoSitePlusQ9H5F2
Domains : Interpro (EBI)UPF0686   
Domain families : Pfam (Sanger)DUF1143 (PF06608)   
Domain families : Pfam (NCBI)pfam06608   
Conserved Domain (NCBI)C11orf1
DMDM Disease mutations64776
Blocks (Seattle)C11orf1
SuperfamilyQ9H5F2
Human Protein AtlasENSG00000137720
Peptide AtlasQ9H5F2
HPRD12601
IPIIPI00034060   IPI00983075   IPI00977386   IPI00983687   IPI00984561   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5F2
IntAct (EBI)Q9H5F2
FunCoupENSG00000137720
BioGRIDC11orf1
STRING (EMBL)C11orf1
ZODIACC11orf1
Ontologies - Pathways
QuickGOQ9H5F2
Ontology : AmiGOmolecular_function  nucleus  nucleoplasm  biological_process  
Ontology : EGO-EBImolecular_function  nucleus  nucleoplasm  biological_process  
NDEx NetworkC11orf1
Atlas of Cancer Signalling NetworkC11orf1
Wikipedia pathwaysC11orf1
Orthology - Evolution
OrthoDB64776
GeneTree (enSembl)ENSG00000137720
Phylogenetic Trees/Animal Genes : TreeFamC11orf1
HOVERGENQ9H5F2
HOGENOMQ9H5F2
Homologs : HomoloGeneC11orf1
Homology/Alignments : Family Browser (UCSC)C11orf1
Gene fusions - Rearrangements
Fusion : MitelmanSIK3/C11orf1 [11q23.3/11q23.1]  [t(11;11)(q23;q23)]  
Fusion: TCGASIK3 11q23.3 C11orf1 11q23.1 LAML
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf1
dbVarC11orf1
ClinVarC11orf1
1000_GenomesC11orf1 
Exome Variant ServerC11orf1
ExAC (Exome Aggregation Consortium)C11orf1 (select the gene name)
Genetic variants : HAPMAP64776
Genomic Variants (DGV)C11orf1 [DGVbeta]
DECIPHER (Syndromes)11:111749948-111754797  ENSG00000137720
CONAN: Copy Number AnalysisC11orf1 
Mutations
ICGC Data PortalC11orf1 
TCGA Data PortalC11orf1 
Broad Tumor PortalC11orf1
OASIS PortalC11orf1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf1
DgiDB (Drug Gene Interaction Database)C11orf1
DoCM (Curated mutations)C11orf1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf1 (select a term)
intoGenC11orf1
Cancer3DC11orf1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf1
Genetic Testing Registry C11orf1
NextProtQ9H5F2 [Medical]
TSGene64776
GENETestsC11orf1
Huge Navigator C11orf1 [HugePedia]
snp3D : Map Gene to Disease64776
BioCentury BCIQC11orf1
ClinGenC11orf1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64776
Chemical/Pharm GKB GenePA25477
Clinical trialC11orf1
Miscellaneous
canSAR (ICR)C11orf1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf1
EVEXC11orf1
GoPubMedC11orf1
iHOPC11orf1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:23 CEST 2017

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