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C11orf16 (chromosome 11 open reading frame 16)

Identity

Other alias-
HGNC (Hugo) C11orf16
LocusID (NCBI) 56673
Atlas_Id 60876
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 8920076 and ends at 8933006 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf16   1169
Cards
Entrez_Gene (NCBI)C11orf16  56673  chromosome 11 open reading frame 16
Aliases
GeneCards (Weizmann)C11orf16
Ensembl hg19 (Hinxton)ENSG00000176029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176029 [Gene_View]  chr11:8920076-8933006 [Contig_View]  C11orf16 [Vega]
ICGC DataPortalENSG00000176029
TCGA cBioPortalC11orf16
AceView (NCBI)C11orf16
Genatlas (Paris)C11orf16
WikiGenes56673
SOURCE (Princeton)C11orf16
Genetics Home Reference (NIH)C11orf16
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf16  -     chr11:8920076-8933006 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf16  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblC11orf16 - 11p15.4 [CytoView hg19]  C11orf16 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIC11orf16 [Mapview hg19]  C11orf16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074455 AK223377 BC027865 CA310676 DA399415
RefSeq transcript (Entrez)NM_020643
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf16
Cluster EST : UnigeneHs.277349 [ NCBI ]
CGAP (NCI)Hs.277349
Alternative Splicing GalleryENSG00000176029
Gene ExpressionC11orf16 [ NCBI-GEO ]   C11orf16 [ EBI - ARRAY_EXPRESS ]   C11orf16 [ SEEK ]   C11orf16 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56673
GTEX Portal (Tissue expression)C11orf16
Human Protein AtlasENSG00000176029-C11orf16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ32
Splice isoforms : SwissVarQ9NQ32
PhosPhoSitePlusQ9NQ32
Domains : Interpro (EBI)DUF4537   
Domain families : Pfam (Sanger)DUF4537 (PF15057)   
Domain families : Pfam (NCBI)pfam15057   
Conserved Domain (NCBI)C11orf16
DMDM Disease mutations56673
Blocks (Seattle)C11orf16
SuperfamilyQ9NQ32
Human Protein Atlas [tissue]ENSG00000176029-C11orf16 [tissue]
Peptide AtlasQ9NQ32
HPRD12604
IPIIPI00163404   IPI00970826   IPI00979787   IPI00978579   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ32
IntAct (EBI)Q9NQ32
FunCoupENSG00000176029
BioGRIDC11orf16
STRING (EMBL)C11orf16
ZODIACC11orf16
Ontologies - Pathways
QuickGOQ9NQ32
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf16
Atlas of Cancer Signalling NetworkC11orf16
Wikipedia pathwaysC11orf16
Orthology - Evolution
OrthoDB56673
GeneTree (enSembl)ENSG00000176029
Phylogenetic Trees/Animal Genes : TreeFamC11orf16
HOVERGENQ9NQ32
HOGENOMQ9NQ32
Homologs : HomoloGeneC11orf16
Homology/Alignments : Family Browser (UCSC)C11orf16
Gene fusions - Rearrangements
Fusion: Tumor Portal C11orf16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf16
dbVarC11orf16
ClinVarC11orf16
1000_GenomesC11orf16 
Exome Variant ServerC11orf16
ExAC (Exome Aggregation Consortium)ENSG00000176029
GNOMAD BrowserENSG00000176029
Genetic variants : HAPMAP56673
Genomic Variants (DGV)C11orf16 [DGVbeta]
DECIPHERC11orf16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf16 
Mutations
ICGC Data PortalC11orf16 
TCGA Data PortalC11orf16 
Broad Tumor PortalC11orf16
OASIS PortalC11orf16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf16
DgiDB (Drug Gene Interaction Database)C11orf16
DoCM (Curated mutations)C11orf16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf16 (select a term)
intoGenC11orf16
Cancer3DC11orf16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf16
Genetic Testing Registry C11orf16
NextProtQ9NQ32 [Medical]
TSGene56673
GENETestsC11orf16
Target ValidationC11orf16
Huge Navigator C11orf16 [HugePedia]
snp3D : Map Gene to Disease56673
BioCentury BCIQC11orf16
ClinGenC11orf16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56673
Chemical/Pharm GKB GenePA25483
Clinical trialC11orf16
Miscellaneous
canSAR (ICR)C11orf16 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf16
EVEXC11orf16
GoPubMedC11orf16
iHOPC11orf16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:39:30 CET 2017

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