Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf21 (chromosome 11 open reading frame 21)

Identity

Other alias-
HGNC (Hugo) C11orf21
LocusID (NCBI) 29125
Atlas_Id 60877
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 2295640 and ends at 2301913 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf21   13231
Cards
Entrez_Gene (NCBI)C11orf21  29125  chromosome 11 open reading frame 21
Aliases
GeneCards (Weizmann)C11orf21
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:2295640-2301913 [Contig_View]  C11orf21 [Vega]
TCGA cBioPortalC11orf21
AceView (NCBI)C11orf21
Genatlas (Paris)C11orf21
WikiGenes29125
SOURCE (Princeton)C11orf21
Genetics Home Reference (NIH)C11orf21
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf21  -     chr11:2295640-2301913 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf21  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblC11orf21 - 11p15.5 [CytoView hg19]  C11orf21 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIC11orf21 [Mapview hg19]  C11orf21 [Mapview hg38]
OMIM611033   
Gene and transcription
Genbank (Entrez)AB029488 AK290921 AK310172 BC028070 BI770361
RefSeq transcript (Entrez)NM_001142946 NM_001329958 NM_014144
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf21
Cluster EST : UnigeneHs.559181 [ NCBI ]
CGAP (NCI)Hs.559181
Gene ExpressionC11orf21 [ NCBI-GEO ]   C11orf21 [ EBI - ARRAY_EXPRESS ]   C11orf21 [ SEEK ]   C11orf21 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29125
GTEX Portal (Tissue expression)C11orf21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2W6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2W6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2W6
Splice isoforms : SwissVarQ9P2W6
PhosPhoSitePlusQ9P2W6
Domains : Interpro (EBI)DUF4620   
Domain families : Pfam (Sanger)DUF4620 (PF15399)   
Domain families : Pfam (NCBI)pfam15399   
Conserved Domain (NCBI)C11orf21
DMDM Disease mutations29125
Blocks (Seattle)C11orf21
SuperfamilyQ9P2W6
Peptide AtlasQ9P2W6
IPIIPI00023022   IPI00853030   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2W6
IntAct (EBI)Q9P2W6
BioGRIDC11orf21
STRING (EMBL)C11orf21
ZODIACC11orf21
Ontologies - Pathways
QuickGOQ9P2W6
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkC11orf21
Atlas of Cancer Signalling NetworkC11orf21
Wikipedia pathwaysC11orf21
Orthology - Evolution
OrthoDB29125
Phylogenetic Trees/Animal Genes : TreeFamC11orf21
HOVERGENQ9P2W6
HOGENOMQ9P2W6
Homologs : HomoloGeneC11orf21
Homology/Alignments : Family Browser (UCSC)C11orf21
Gene fusions - Rearrangements
Fusion: Tumor Portal C11orf21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf21
dbVarC11orf21
ClinVarC11orf21
1000_GenomesC11orf21 
Exome Variant ServerC11orf21
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP29125
Genomic Variants (DGV)C11orf21 [DGVbeta]
DECIPHERC11orf21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf21 
Mutations
ICGC Data PortalC11orf21 
TCGA Data PortalC11orf21 
Broad Tumor PortalC11orf21
OASIS PortalC11orf21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf21
DgiDB (Drug Gene Interaction Database)C11orf21
DoCM (Curated mutations)C11orf21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf21 (select a term)
intoGenC11orf21
Cancer3DC11orf21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611033   
Orphanet
MedgenC11orf21
Genetic Testing Registry C11orf21
NextProtQ9P2W6 [Medical]
TSGene29125
GENETestsC11orf21
Target ValidationC11orf21
Huge Navigator C11orf21 [HugePedia]
snp3D : Map Gene to Disease29125
BioCentury BCIQC11orf21
ClinGenC11orf21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29125
Chemical/Pharm GKB GenePA25486
Clinical trialC11orf21
Miscellaneous
canSAR (ICR)C11orf21 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf21
EVEXC11orf21
GoPubMedC11orf21
iHOPC11orf21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:30 CET 2017

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