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C11orf24 (chromosome 11 open reading frame 24)

Identity

Alias_symbol (synonym)DM4E3
Other alias
HGNC (Hugo) C11orf24
LocusID (NCBI) 53838
Atlas_Id 60878
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 68261335 and ends at 68272001 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HFM1 (1p22.2) / C11orf24 (11q13.2)PGD (1p36.22) / C11orf24 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf24   1174
Cards
Entrez_Gene (NCBI)C11orf24  53838  chromosome 11 open reading frame 24
AliasesDM4E3
GeneCards (Weizmann)C11orf24
Ensembl hg19 (Hinxton)ENSG00000171067 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171067 [Gene_View]  chr11:68261335-68272001 [Contig_View]  C11orf24 [Vega]
ICGC DataPortalENSG00000171067
TCGA cBioPortalC11orf24
AceView (NCBI)C11orf24
Genatlas (Paris)C11orf24
WikiGenes53838
SOURCE (Princeton)C11orf24
Genetics Home Reference (NIH)C11orf24
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf24  -     chr11:68261335-68272001 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf24  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblC11orf24 - 11q13.2 [CytoView hg19]  C11orf24 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIC11orf24 [Mapview hg19]  C11orf24 [Mapview hg38]
OMIM610880   
Gene and transcription
Genbank (Entrez)AF264781 AF370372 AY358754 BC011765 BG701401
RefSeq transcript (Entrez)NM_001300913 NM_022338
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf24
Cluster EST : UnigeneHs.303025 [ NCBI ]
CGAP (NCI)Hs.303025
Alternative Splicing GalleryENSG00000171067
Gene ExpressionC11orf24 [ NCBI-GEO ]   C11orf24 [ EBI - ARRAY_EXPRESS ]   C11orf24 [ SEEK ]   C11orf24 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53838
GTEX Portal (Tissue expression)C11orf24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96F05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96F05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96F05
Splice isoforms : SwissVarQ96F05
PhosPhoSitePlusQ96F05
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf24
DMDM Disease mutations53838
Blocks (Seattle)C11orf24
SuperfamilyQ96F05
Human Protein AtlasENSG00000171067
Peptide AtlasQ96F05
HPRD10704
IPIIPI00304918   IPI00980373   IPI00979613   
Protein Interaction databases
DIP (DOE-UCLA)Q96F05
IntAct (EBI)Q96F05
FunCoupENSG00000171067
BioGRIDC11orf24
STRING (EMBL)C11orf24
ZODIACC11orf24
Ontologies - Pathways
QuickGOQ96F05
Ontology : AmiGOGolgi apparatus  plasma membrane  integral component of membrane  
Ontology : EGO-EBIGolgi apparatus  plasma membrane  integral component of membrane  
NDEx NetworkC11orf24
Atlas of Cancer Signalling NetworkC11orf24
Wikipedia pathwaysC11orf24
Orthology - Evolution
OrthoDB53838
GeneTree (enSembl)ENSG00000171067
Phylogenetic Trees/Animal Genes : TreeFamC11orf24
HOVERGENQ96F05
HOGENOMQ96F05
Homologs : HomoloGeneC11orf24
Homology/Alignments : Family Browser (UCSC)C11orf24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf24
dbVarC11orf24
ClinVarC11orf24
1000_GenomesC11orf24 
Exome Variant ServerC11orf24
ExAC (Exome Aggregation Consortium)C11orf24 (select the gene name)
Genetic variants : HAPMAP53838
Genomic Variants (DGV)C11orf24 [DGVbeta]
DECIPHERC11orf24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf24 
Mutations
ICGC Data PortalC11orf24 
TCGA Data PortalC11orf24 
Broad Tumor PortalC11orf24
OASIS PortalC11orf24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf24
DgiDB (Drug Gene Interaction Database)C11orf24
DoCM (Curated mutations)C11orf24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf24 (select a term)
intoGenC11orf24
Cancer3DC11orf24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610880   
Orphanet
MedgenC11orf24
Genetic Testing Registry C11orf24
NextProtQ96F05 [Medical]
TSGene53838
GENETestsC11orf24
Target ValidationC11orf24
Huge Navigator C11orf24 [HugePedia]
snp3D : Map Gene to Disease53838
BioCentury BCIQC11orf24
ClinGenC11orf24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53838
Chemical/Pharm GKB GenePA25488
Clinical trialC11orf24
Miscellaneous
canSAR (ICR)C11orf24 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf24
EVEXC11orf24
GoPubMedC11orf24
iHOPC11orf24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:09 CEST 2017

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