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C11orf31 (chromosome 11 open reading frame 31)

Identity

Other aliasC17orf10
SELH
HGNC (Hugo) C11orf31
LocusID (NCBI) 280636
Atlas_Id 60879
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57508722 and ends at 57510883 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C11orf31 (11q12.1) / CTNND1 (11q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf31   18251
Cards
Entrez_Gene (NCBI)C11orf31  280636  chromosome 11 open reading frame 31
AliasesC17orf10; SELH
GeneCards (Weizmann)C11orf31
Ensembl hg19 (Hinxton)ENSG00000211450 [Gene_View]  chr11:57508722-57510883 [Contig_View]  C11orf31 [Vega]
Ensembl hg38 (Hinxton)ENSG00000211450 [Gene_View]  chr11:57508722-57510883 [Contig_View]  C11orf31 [Vega]
ICGC DataPortalENSG00000211450
TCGA cBioPortalC11orf31
AceView (NCBI)C11orf31
Genatlas (Paris)C11orf31
WikiGenes280636
SOURCE (Princeton)C11orf31
Genetics Home Reference (NIH)C11orf31
Genomic and cartography
GoldenPath hg19 (UCSC)C11orf31  -     chr11:57508722-57510883 +  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C11orf31  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblC11orf31 - 11q12.1 [CytoView hg19]  C11orf31 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf31 [Mapview hg19]  C11orf31 [Mapview hg38]
OMIM607914   
Gene and transcription
Genbank (Entrez)AF085883 AF536829 AJ276249 AJ276250 BC021122
RefSeq transcript (Entrez)NM_170746
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)C11orf31
Cluster EST : UnigeneHs.745174 [ NCBI ]
CGAP (NCI)Hs.745174
Alternative Splicing GalleryENSG00000211450
Gene ExpressionC11orf31 [ NCBI-GEO ]   C11orf31 [ EBI - ARRAY_EXPRESS ]   C11orf31 [ SEEK ]   C11orf31 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)280636
GTEX Portal (Tissue expression)C11orf31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZQ5
Splice isoforms : SwissVarQ8IZQ5
PhosPhoSitePlusQ8IZQ5
Domains : Interpro (EBI)Selenoprotein_Rdx-typ    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Rdx (PF10262)   
Domain families : Pfam (NCBI)pfam10262   
Conserved Domain (NCBI)C11orf31
DMDM Disease mutations280636
Blocks (Seattle)C11orf31
SuperfamilyQ8IZQ5
Human Protein AtlasENSG00000211450
Peptide AtlasQ8IZQ5
HPRD07447
IPIIPI00218054   IPI00982639   IPI00981342   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZQ5
IntAct (EBI)Q8IZQ5
FunCoupENSG00000211450
BioGRIDC11orf31
STRING (EMBL)C11orf31
ZODIACC11orf31
Ontologies - Pathways
QuickGOQ8IZQ5
Ontology : AmiGOcell  selenium binding  poly(A) RNA binding  cell redox homeostasis  
Ontology : EGO-EBIcell  selenium binding  poly(A) RNA binding  cell redox homeostasis  
NDEx NetworkC11orf31
Atlas of Cancer Signalling NetworkC11orf31
Wikipedia pathwaysC11orf31
Orthology - Evolution
OrthoDB280636
GeneTree (enSembl)ENSG00000211450
Phylogenetic Trees/Animal Genes : TreeFamC11orf31
HOVERGENQ8IZQ5
HOGENOMQ8IZQ5
Homologs : HomoloGeneC11orf31
Homology/Alignments : Family Browser (UCSC)C11orf31
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf31
dbVarC11orf31
ClinVarC11orf31
1000_GenomesC11orf31 
Exome Variant ServerC11orf31
ExAC (Exome Aggregation Consortium)C11orf31 (select the gene name)
Genetic variants : HAPMAP280636
Genomic Variants (DGV)C11orf31 [DGVbeta]
DECIPHER (Syndromes)11:57508722-57510883  ENSG00000211450
CONAN: Copy Number AnalysisC11orf31 
Mutations
ICGC Data PortalC11orf31 
TCGA Data PortalC11orf31 
Broad Tumor PortalC11orf31
OASIS PortalC11orf31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf31
DgiDB (Drug Gene Interaction Database)C11orf31
DoCM (Curated mutations)C11orf31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf31 (select a term)
intoGenC11orf31
Cancer3DC11orf31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607914   
Orphanet
MedgenC11orf31
Genetic Testing Registry C11orf31
NextProtQ8IZQ5 [Medical]
TSGene280636
GENETestsC11orf31
Huge Navigator C11orf31 [HugePedia]
snp3D : Map Gene to Disease280636
BioCentury BCIQC11orf31
ClinGenC11orf31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD280636
Chemical/Pharm GKB GenePA25495
Clinical trialC11orf31
Miscellaneous
canSAR (ICR)C11orf31 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf31
EVEXC11orf31
GoPubMedC11orf31
iHOPC11orf31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:17 CET 2017

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