Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf39 (chromosome 11 open reading frame 39)

Identity

Other alias-
HGNC (Hugo) C11orf39
LocusID (NCBI) 101929637
Atlas_Id 60880
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 131528207 and ends at 131532850 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf39   32293
Cards
Entrez_Gene (NCBI)C11orf39  101929637  chromosome 11 open reading frame 39
Aliases
GeneCards (Weizmann)C11orf39
Ensembl hg19 (Hinxton)ENSG00000224795 [Gene_View]  chr11:131528207-131532850 [Contig_View]  C11orf39 [Vega]
Ensembl hg38 (Hinxton)ENSG00000224795 [Gene_View]  chr11:131528207-131532850 [Contig_View]  C11orf39 [Vega]
ICGC DataPortalENSG00000224795
TCGA cBioPortalC11orf39
AceView (NCBI)C11orf39
Genatlas (Paris)C11orf39
WikiGenes101929637
SOURCE (Princeton)C11orf39
Genetics Home Reference (NIH)C11orf39
Genomic and cartography
GoldenPath hg19 (UCSC)C11orf39  -     chr11:131528207-131532850 -  11q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C11orf39  -     11q25   [Description]    (hg38-Dec_2013)
EnsemblC11orf39 - 11q25 [CytoView hg19]  C11orf39 - 11q25 [CytoView hg38]
Mapping of homologs : NCBIC11orf39 [Mapview hg19]  C11orf39 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127362 HG504339
RefSeq transcript (Entrez)NM_207432
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)C11orf39
Cluster EST : UnigeneHs.730330 [ NCBI ]
CGAP (NCI)Hs.730330
Alternative Splicing GalleryENSG00000224795
Gene ExpressionC11orf39 [ NCBI-GEO ]   C11orf39 [ EBI - ARRAY_EXPRESS ]   C11orf39 [ SEEK ]   C11orf39 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101929637
GTEX Portal (Tissue expression)C11orf39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSK4
Splice isoforms : SwissVarQ6ZSK4
PhosPhoSitePlusQ6ZSK4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf39
DMDM Disease mutations101929637
Blocks (Seattle)C11orf39
SuperfamilyQ6ZSK4
Human Protein AtlasENSG00000224795
Peptide AtlasQ6ZSK4
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSK4
IntAct (EBI)Q6ZSK4
FunCoupENSG00000224795
BioGRIDC11orf39
STRING (EMBL)C11orf39
ZODIACC11orf39
Ontologies - Pathways
QuickGOQ6ZSK4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf39
Atlas of Cancer Signalling NetworkC11orf39
Wikipedia pathwaysC11orf39
Orthology - Evolution
OrthoDB101929637
GeneTree (enSembl)ENSG00000224795
Phylogenetic Trees/Animal Genes : TreeFamC11orf39
HOVERGENQ6ZSK4
HOGENOMQ6ZSK4
Homologs : HomoloGeneC11orf39
Homology/Alignments : Family Browser (UCSC)C11orf39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf39
dbVarC11orf39
ClinVarC11orf39
1000_GenomesC11orf39 
Exome Variant ServerC11orf39
ExAC (Exome Aggregation Consortium)C11orf39 (select the gene name)
Genetic variants : HAPMAP101929637
Genomic Variants (DGV)C11orf39 [DGVbeta]
DECIPHER (Syndromes)11:131528207-131532850  ENSG00000224795
CONAN: Copy Number AnalysisC11orf39 
Mutations
ICGC Data PortalC11orf39 
TCGA Data PortalC11orf39 
Broad Tumor PortalC11orf39
OASIS PortalC11orf39 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC11orf39
BioMutasearch C11orf39
DgiDB (Drug Gene Interaction Database)C11orf39
DoCM (Curated mutations)C11orf39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf39 (select a term)
intoGenC11orf39
Cancer3DC11orf39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf39
Genetic Testing Registry C11orf39
NextProtQ6ZSK4 [Medical]
TSGene101929637
GENETestsC11orf39
Huge Navigator C11orf39 [HugePedia]
snp3D : Map Gene to Disease101929637
BioCentury BCIQC11orf39
ClinGenC11orf39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929637
Clinical trialC11orf39
Miscellaneous
canSAR (ICR)C11orf39 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf39
EVEXC11orf39
GoPubMedC11orf39
iHOPC11orf39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:17 CET 2017

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