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C11orf40 (chromosome 11 open reading frame 40)

Identity

Alias_symbol (synonym)1-Nov
Other alias
HGNC (Hugo) C11orf40
LocusID (NCBI) 143501
Atlas_Id 60881
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4571423 and ends at 4577820 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf40   23986
Cards
Entrez_Gene (NCBI)C11orf40  143501  chromosome 11 open reading frame 40
Aliases1-Nov
GeneCards (Weizmann)C11orf40
Ensembl hg19 (Hinxton)ENSG00000171987 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171987 [Gene_View]  chr11:4571423-4577820 [Contig_View]  C11orf40 [Vega]
ICGC DataPortalENSG00000171987
TCGA cBioPortalC11orf40
AceView (NCBI)C11orf40
Genatlas (Paris)C11orf40
WikiGenes143501
SOURCE (Princeton)C11orf40
Genetics Home Reference (NIH)C11orf40
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf40  -     chr11:4571423-4577820 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf40  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblC11orf40 - 11p15.4 [CytoView hg19]  C11orf40 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIC11orf40 [Mapview hg19]  C11orf40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF439154 BC152949
RefSeq transcript (Entrez)NM_144663
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf40
Cluster EST : UnigeneHs.350556 [ NCBI ]
CGAP (NCI)Hs.350556
Alternative Splicing GalleryENSG00000171987
Gene ExpressionC11orf40 [ NCBI-GEO ]   C11orf40 [ EBI - ARRAY_EXPRESS ]   C11orf40 [ SEEK ]   C11orf40 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143501
GTEX Portal (Tissue expression)C11orf40
Human Protein AtlasENSG00000171987-C11orf40 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZ69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZ69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZ69
Splice isoforms : SwissVarQ8WZ69
PhosPhoSitePlusQ8WZ69
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf40
DMDM Disease mutations143501
Blocks (Seattle)C11orf40
SuperfamilyQ8WZ69
Human Protein Atlas [tissue]ENSG00000171987-C11orf40 [tissue]
Peptide AtlasQ8WZ69
HPRD17643
IPIIPI00103858   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZ69
IntAct (EBI)Q8WZ69
FunCoupENSG00000171987
BioGRIDC11orf40
STRING (EMBL)C11orf40
ZODIACC11orf40
Ontologies - Pathways
QuickGOQ8WZ69
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf40
Atlas of Cancer Signalling NetworkC11orf40
Wikipedia pathwaysC11orf40
Orthology - Evolution
OrthoDB143501
GeneTree (enSembl)ENSG00000171987
Phylogenetic Trees/Animal Genes : TreeFamC11orf40
HOVERGENQ8WZ69
HOGENOMQ8WZ69
Homologs : HomoloGeneC11orf40
Homology/Alignments : Family Browser (UCSC)C11orf40
Gene fusions - Rearrangements
Fusion: Tumor Portal C11orf40
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf40
dbVarC11orf40
ClinVarC11orf40
1000_GenomesC11orf40 
Exome Variant ServerC11orf40
ExAC (Exome Aggregation Consortium)ENSG00000171987
GNOMAD BrowserENSG00000171987
Genetic variants : HAPMAP143501
Genomic Variants (DGV)C11orf40 [DGVbeta]
DECIPHERC11orf40 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf40 
Mutations
ICGC Data PortalC11orf40 
TCGA Data PortalC11orf40 
Broad Tumor PortalC11orf40
OASIS PortalC11orf40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf40
DgiDB (Drug Gene Interaction Database)C11orf40
DoCM (Curated mutations)C11orf40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf40 (select a term)
intoGenC11orf40
Cancer3DC11orf40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf40
Genetic Testing Registry C11orf40
NextProtQ8WZ69 [Medical]
TSGene143501
GENETestsC11orf40
Target ValidationC11orf40
Huge Navigator C11orf40 [HugePedia]
snp3D : Map Gene to Disease143501
BioCentury BCIQC11orf40
ClinGenC11orf40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143501
Chemical/Pharm GKB GenePA142672300
Clinical trialC11orf40
Miscellaneous
canSAR (ICR)C11orf40 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf40
EVEXC11orf40
GoPubMedC11orf40
iHOPC11orf40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:39:31 CET 2017

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