Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf42 (chromosome 11 open reading frame 42)

Identity

Alias_symbol (synonym)MGC34805
Other alias-
HGNC (Hugo) C11orf42
LocusID (NCBI) 160298
Atlas_Id 60882
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6205568 and ends at 6211135 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf42   28541
Cards
Entrez_Gene (NCBI)C11orf42  160298  chromosome 11 open reading frame 42
Aliases
GeneCards (Weizmann)C11orf42
Ensembl hg19 (Hinxton)ENSG00000180878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180878 [Gene_View]  chr11:6205568-6211135 [Contig_View]  C11orf42 [Vega]
ICGC DataPortalENSG00000180878
TCGA cBioPortalC11orf42
AceView (NCBI)C11orf42
Genatlas (Paris)C11orf42
WikiGenes160298
SOURCE (Princeton)C11orf42
Genetics Home Reference (NIH)C11orf42
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf42  -     chr11:6205568-6211135 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf42  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblC11orf42 - 11p15.4 [CytoView hg19]  C11orf42 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIC11orf42 [Mapview hg19]  C11orf42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA781757 BC031612
RefSeq transcript (Entrez)NM_173525
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf42
Cluster EST : UnigeneHs.278221 [ NCBI ]
CGAP (NCI)Hs.278221
Alternative Splicing GalleryENSG00000180878
Gene ExpressionC11orf42 [ NCBI-GEO ]   C11orf42 [ EBI - ARRAY_EXPRESS ]   C11orf42 [ SEEK ]   C11orf42 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160298
GTEX Portal (Tissue expression)C11orf42
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5U0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5U0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5U0
Splice isoforms : SwissVarQ8N5U0
PhosPhoSitePlusQ8N5U0
Domains : Interpro (EBI)DUF4663   
Domain families : Pfam (Sanger)DUF4663 (PF15668)   
Domain families : Pfam (NCBI)pfam15668   
Conserved Domain (NCBI)C11orf42
DMDM Disease mutations160298
Blocks (Seattle)C11orf42
SuperfamilyQ8N5U0
Human Protein AtlasENSG00000180878
Peptide AtlasQ8N5U0
HPRD14590
IPIIPI00166914   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5U0
IntAct (EBI)Q8N5U0
FunCoupENSG00000180878
BioGRIDC11orf42
STRING (EMBL)C11orf42
ZODIACC11orf42
Ontologies - Pathways
QuickGOQ8N5U0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf42
Atlas of Cancer Signalling NetworkC11orf42
Wikipedia pathwaysC11orf42
Orthology - Evolution
OrthoDB160298
GeneTree (enSembl)ENSG00000180878
Phylogenetic Trees/Animal Genes : TreeFamC11orf42
HOVERGENQ8N5U0
HOGENOMQ8N5U0
Homologs : HomoloGeneC11orf42
Homology/Alignments : Family Browser (UCSC)C11orf42
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf42
dbVarC11orf42
ClinVarC11orf42
1000_GenomesC11orf42 
Exome Variant ServerC11orf42
ExAC (Exome Aggregation Consortium)C11orf42 (select the gene name)
Genetic variants : HAPMAP160298
Genomic Variants (DGV)C11orf42 [DGVbeta]
DECIPHERC11orf42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf42 
Mutations
ICGC Data PortalC11orf42 
TCGA Data PortalC11orf42 
Broad Tumor PortalC11orf42
OASIS PortalC11orf42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf42
DgiDB (Drug Gene Interaction Database)C11orf42
DoCM (Curated mutations)C11orf42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf42 (select a term)
intoGenC11orf42
Cancer3DC11orf42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf42
Genetic Testing Registry C11orf42
NextProtQ8N5U0 [Medical]
TSGene160298
GENETestsC11orf42
Target ValidationC11orf42
Huge Navigator C11orf42 [HugePedia]
snp3D : Map Gene to Disease160298
BioCentury BCIQC11orf42
ClinGenC11orf42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160298
Chemical/Pharm GKB GenePA142672287
Clinical trialC11orf42
Miscellaneous
canSAR (ICR)C11orf42 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf42
EVEXC11orf42
GoPubMedC11orf42
iHOPC11orf42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:09 CEST 2017

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