Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf44 (chromosome 11 open reading frame 44)

Identity

Alias_symbol (synonym)FLJ39058
Other alias-
HGNC (Hugo) C11orf44
LocusID (NCBI) 283171
Atlas_Id 60883
Location 11q24.3  [Link to chromosome band 11q24]
Location_base_pair Starts at 130672956 and ends at 130717352 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf44   26805
Cards
Entrez_Gene (NCBI)C11orf44  283171  chromosome 11 open reading frame 44
Aliases
GeneCards (Weizmann)C11orf44
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:130672956-130717352 [Contig_View]  C11orf44 [Vega]
TCGA cBioPortalC11orf44
AceView (NCBI)C11orf44
Genatlas (Paris)C11orf44
WikiGenes283171
SOURCE (Princeton)C11orf44
Genetics Home Reference (NIH)C11orf44
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf44  -     chr11:130672956-130717352 +  11q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf44  -     11q24.3   [Description]    (hg19-Feb_2009)
EnsemblC11orf44 - 11q24.3 [CytoView hg19]  C11orf44 - 11q24.3 [CytoView hg38]
Mapping of homologs : NCBIC11orf44 [Mapview hg19]  C11orf44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096377
RefSeq transcript (Entrez)NM_001271983
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf44
Cluster EST : UnigeneHs.376151 [ NCBI ]
CGAP (NCI)Hs.376151
Gene ExpressionC11orf44 [ NCBI-GEO ]   C11orf44 [ EBI - ARRAY_EXPRESS ]   C11orf44 [ SEEK ]   C11orf44 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283171
GTEX Portal (Tissue expression)C11orf44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8P7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8P7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8P7
Splice isoforms : SwissVarQ8N8P7
PhosPhoSitePlusQ8N8P7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf44
DMDM Disease mutations283171
Blocks (Seattle)C11orf44
SuperfamilyQ8N8P7
Peptide AtlasQ8N8P7
HPRD08250
IPIIPI00167524   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8P7
IntAct (EBI)Q8N8P7
BioGRIDC11orf44
STRING (EMBL)C11orf44
ZODIACC11orf44
Ontologies - Pathways
QuickGOQ8N8P7
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC11orf44
Atlas of Cancer Signalling NetworkC11orf44
Wikipedia pathwaysC11orf44
Orthology - Evolution
OrthoDB283171
Phylogenetic Trees/Animal Genes : TreeFamC11orf44
HOVERGENQ8N8P7
HOGENOMQ8N8P7
Homologs : HomoloGeneC11orf44
Homology/Alignments : Family Browser (UCSC)C11orf44
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf44
dbVarC11orf44
ClinVarC11orf44
1000_GenomesC11orf44 
Exome Variant ServerC11orf44
ExAC (Exome Aggregation Consortium)C11orf44 (select the gene name)
Genetic variants : HAPMAP283171
Genomic Variants (DGV)C11orf44 [DGVbeta]
DECIPHERC11orf44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf44 
Mutations
ICGC Data PortalC11orf44 
TCGA Data PortalC11orf44 
Broad Tumor PortalC11orf44
OASIS PortalC11orf44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf44
DgiDB (Drug Gene Interaction Database)C11orf44
DoCM (Curated mutations)C11orf44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf44 (select a term)
intoGenC11orf44
Cancer3DC11orf44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf44
Genetic Testing Registry C11orf44
NextProtQ8N8P7 [Medical]
TSGene283171
GENETestsC11orf44
Target ValidationC11orf44
Huge Navigator C11orf44 [HugePedia]
snp3D : Map Gene to Disease283171
BioCentury BCIQC11orf44
ClinGenC11orf44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283171
Chemical/Pharm GKB GenePA142672289
Clinical trialC11orf44
Miscellaneous
canSAR (ICR)C11orf44 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf44
EVEXC11orf44
GoPubMedC11orf44
iHOPC11orf44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:10 CEST 2017

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