Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf45 (chromosome 11 open reading frame 45)

Identity

Alias_symbol (synonym)MGC35558
FLJ43646
Other alias-
HGNC (Hugo) C11orf45
LocusID (NCBI) 219833
Atlas_Id 60884
Location 11q24.3  [Link to chromosome band 11q24]
Location_base_pair Starts at 128899565 and ends at 128906069 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf45   28584
Cards
Entrez_Gene (NCBI)C11orf45  219833  chromosome 11 open reading frame 45
Aliases
GeneCards (Weizmann)C11orf45
Ensembl hg19 (Hinxton)ENSG00000174370 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174370 [Gene_View]  chr11:128899565-128906069 [Contig_View]  C11orf45 [Vega]
ICGC DataPortalENSG00000174370
TCGA cBioPortalC11orf45
AceView (NCBI)C11orf45
Genatlas (Paris)C11orf45
WikiGenes219833
SOURCE (Princeton)C11orf45
Genetics Home Reference (NIH)C11orf45
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf45  -     chr11:128899565-128906069 -  11q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf45  -     11q24.3   [Description]    (hg19-Feb_2009)
EnsemblC11orf45 - 11q24.3 [CytoView hg19]  C11orf45 - 11q24.3 [CytoView hg38]
Mapping of homologs : NCBIC11orf45 [Mapview hg19]  C11orf45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125634 AK314137 BC025756 BX956612 DB219954
RefSeq transcript (Entrez)NM_001256088 NM_145013
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf45
Cluster EST : UnigeneHs.689860 [ NCBI ]
CGAP (NCI)Hs.689860
Alternative Splicing GalleryENSG00000174370
Gene ExpressionC11orf45 [ NCBI-GEO ]   C11orf45 [ EBI - ARRAY_EXPRESS ]   C11orf45 [ SEEK ]   C11orf45 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219833
GTEX Portal (Tissue expression)C11orf45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAV5
Splice isoforms : SwissVarQ8TAV5
PhosPhoSitePlusQ8TAV5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf45
DMDM Disease mutations219833
Blocks (Seattle)C11orf45
SuperfamilyQ8TAV5
Human Protein AtlasENSG00000174370
Peptide AtlasQ8TAV5
HPRD11344
IPIIPI00152127   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAV5
IntAct (EBI)Q8TAV5
FunCoupENSG00000174370
BioGRIDC11orf45
STRING (EMBL)C11orf45
ZODIACC11orf45
Ontologies - Pathways
QuickGOQ8TAV5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC11orf45
Atlas of Cancer Signalling NetworkC11orf45
Wikipedia pathwaysC11orf45
Orthology - Evolution
OrthoDB219833
GeneTree (enSembl)ENSG00000174370
Phylogenetic Trees/Animal Genes : TreeFamC11orf45
HOVERGENQ8TAV5
HOGENOMQ8TAV5
Homologs : HomoloGeneC11orf45
Homology/Alignments : Family Browser (UCSC)C11orf45
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf45
dbVarC11orf45
ClinVarC11orf45
1000_GenomesC11orf45 
Exome Variant ServerC11orf45
ExAC (Exome Aggregation Consortium)C11orf45 (select the gene name)
Genetic variants : HAPMAP219833
Genomic Variants (DGV)C11orf45 [DGVbeta]
DECIPHERC11orf45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf45 
Mutations
ICGC Data PortalC11orf45 
TCGA Data PortalC11orf45 
Broad Tumor PortalC11orf45
OASIS PortalC11orf45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf45
DgiDB (Drug Gene Interaction Database)C11orf45
DoCM (Curated mutations)C11orf45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf45 (select a term)
intoGenC11orf45
Cancer3DC11orf45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf45
Genetic Testing Registry C11orf45
NextProtQ8TAV5 [Medical]
TSGene219833
GENETestsC11orf45
Target ValidationC11orf45
Huge Navigator C11orf45 [HugePedia]
snp3D : Map Gene to Disease219833
BioCentury BCIQC11orf45
ClinGenC11orf45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219833
Chemical/Pharm GKB GenePA142672290
Clinical trialC11orf45
Miscellaneous
canSAR (ICR)C11orf45 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf45
EVEXC11orf45
GoPubMedC11orf45
iHOPC11orf45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:02:38 CEST 2017

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