Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C11orf49 (chromosome 11 open reading frame 49)

Identity

Alias (NCBI)-
HGNC (Hugo) C11orf49
HGNC Alias symbFLJ22210
MGC4707
LocusID (NCBI) 79096
Atlas_Id 60885
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46936689 and ends at 47162247 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C11orf49 (11p11.2) / F2 (11p11.2)C11orf49 (11p11.2) / HNRNPM (19p13.2)C11orf49 (11p11.2) / NUP98 (11p15.4)
C11orf49 (11p11.2) / PPME1 (11q13.4)HNRNPUL2 (11q12.3) / C11orf49 (11p11.2)SHANK2 (11q13.3) / C11orf49 (11p11.2)
TSEN54 (17q25.1) / C11orf49 (11p11.2)C11orf49 PPME1C11orf49 F2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]
  C11orf49/F2 (11p11)
t(11;11)(p11;p15) C11orf49/NUP98
t(11;11)(p11;q13) C11orf49/PPME1
t(11;11)(p11;q13) SHANK2/C11orf49

External links

Nomenclature
HGNC (Hugo)C11orf49   28720
Cards
Entrez_Gene (NCBI)C11orf49    chromosome 11 open reading frame 49
Aliases
GeneCards (Weizmann)C11orf49
Ensembl hg19 (Hinxton)ENSG00000149179 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149179 [Gene_View]  ENSG00000149179 [Sequence]  chr11:46936689-47162247 [Contig_View]  C11orf49 [Vega]
ICGC DataPortalENSG00000149179
TCGA cBioPortalC11orf49
AceView (NCBI)C11orf49
Genatlas (Paris)C11orf49
SOURCE (Princeton)C11orf49
Genetics Home Reference (NIH)C11orf49
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf49  -     chr11:46936689-47162247 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf49  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathC11orf49 - 11p11.2 [CytoView hg19]  C11orf49 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000149179
genome Data Viewer NCBIC11orf49 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK025863 AK124296 AK293609 AK300813 AK315639
RefSeq transcript (Entrez)NM_001003676 NM_001003677 NM_001003678 NM_001278222 NM_024113
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf49
Alternative Splicing GalleryENSG00000149179
Gene ExpressionC11orf49 [ NCBI-GEO ]   C11orf49 [ EBI - ARRAY_EXPRESS ]   C11orf49 [ SEEK ]   C11orf49 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf49 [ Firebrowse - Broad ]
GenevisibleExpression of C11orf49 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79096
GTEX Portal (Tissue expression)C11orf49
Human Protein AtlasENSG00000149179-C11orf49 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6J7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6J7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6J7
Splice isoforms : SwissVarQ9H6J7
PhosPhoSitePlusQ9H6J7
Domains : Interpro (EBI)C11orf49   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf49
Blocks (Seattle)C11orf49
SuperfamilyQ9H6J7
Human Protein Atlas [tissue]ENSG00000149179-C11orf49 [tissue]
Peptide AtlasQ9H6J7
HPRD08332
IPIIPI00456768   IPI00456751   IPI00465254   IPI01014364   IPI01015494   IPI00975710   IPI00976869   IPI00455981   IPI00976373   IPI00984025   IPI00976286   IPI00977709   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6J7
IntAct (EBI)Q9H6J7
BioGRIDC11orf49
STRING (EMBL)C11orf49
ZODIACC11orf49
Ontologies - Pathways
QuickGOQ9H6J7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC11orf49
Atlas of Cancer Signalling NetworkC11orf49
Wikipedia pathwaysC11orf49
Orthology - Evolution
OrthoDB79096
GeneTree (enSembl)ENSG00000149179
Phylogenetic Trees/Animal Genes : TreeFamC11orf49
HOGENOMQ9H6J7
Homologs : HomoloGeneC11orf49
Homology/Alignments : Family Browser (UCSC)C11orf49
Gene fusions - Rearrangements
Fusion PortalC11orf49 PPME1
Fusion PortalC11orf49 F2
Fusion : QuiverC11orf49
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf49 [hg38]
dbVarC11orf49
ClinVarC11orf49
MonarchC11orf49
1000_GenomesC11orf49 
Exome Variant ServerC11orf49
GNOMAD BrowserENSG00000149179
Varsome BrowserC11orf49
Genomic Variants (DGV)C11orf49 [DGVbeta]
DECIPHERC11orf49 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf49 
Mutations
ICGC Data PortalC11orf49 
TCGA Data PortalC11orf49 
Broad Tumor PortalC11orf49
OASIS PortalC11orf49 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf49  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC11orf49
Mutations and Diseases : HGMDC11orf49
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf49
DgiDB (Drug Gene Interaction Database)C11orf49
DoCM (Curated mutations)C11orf49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf49 (select a term)
intoGenC11orf49
Cancer3DC11orf49(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC11orf49
MedgenC11orf49
Genetic Testing Registry C11orf49
NextProtQ9H6J7 [Medical]
GENETestsC11orf49
Target ValidationC11orf49
Huge Navigator C11orf49 [HugePedia]
ClinGenC11orf49
Clinical trials, drugs, therapy
MyCancerGenomeC11orf49
Protein Interactions : CTD
Pharm GKB GenePA143485345
Clinical trialC11orf49
Miscellaneous
canSAR (ICR)C11orf49 (select the gene name)
HarmonizomeC11orf49
DataMed IndexC11orf49
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf49
EVEXC11orf49
GoPubMedC11orf49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:47:26 CET 2020
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