Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C11orf52 (chromosome 11 open reading frame 52)

Identity

Alias_symbol (synonym)MGC14839
FLJ25219
Other alias-
HGNC (Hugo) C11orf52
LocusID (NCBI) 91894
Atlas_Id 60886
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111918877 and ends at 111926871 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HSPB2 (11q23.1) / C11orf52 (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf52   30531
Cards
Entrez_Gene (NCBI)C11orf52  91894  chromosome 11 open reading frame 52
Aliases
GeneCards (Weizmann)C11orf52
Ensembl hg19 (Hinxton)ENSG00000149300 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149300 [Gene_View]  chr11:111918877-111926871 [Contig_View]  C11orf52 [Vega]
ICGC DataPortalENSG00000149300
TCGA cBioPortalC11orf52
AceView (NCBI)C11orf52
Genatlas (Paris)C11orf52
WikiGenes91894
SOURCE (Princeton)C11orf52
Genetics Home Reference (NIH)C11orf52
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf52  -     chr11:111918877-111926871 +  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf52  -     11q23.1   [Description]    (hg19-Feb_2009)
EnsemblC11orf52 - 11q23.1 [CytoView hg19]  C11orf52 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf52 [Mapview hg19]  C11orf52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057948 BC008501 BQ102454
RefSeq transcript (Entrez)NM_080659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf52
Cluster EST : UnigeneHs.97013 [ NCBI ]
CGAP (NCI)Hs.97013
Alternative Splicing GalleryENSG00000149300
Gene ExpressionC11orf52 [ NCBI-GEO ]   C11orf52 [ EBI - ARRAY_EXPRESS ]   C11orf52 [ SEEK ]   C11orf52 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91894
GTEX Portal (Tissue expression)C11orf52
Human Protein AtlasENSG00000149300-C11orf52 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A22
Splice isoforms : SwissVarQ96A22
PhosPhoSitePlusQ96A22
Domains : Interpro (EBI)DUF4578   
Domain families : Pfam (Sanger)DUF4578 (PF15147)   
Domain families : Pfam (NCBI)pfam15147   
Conserved Domain (NCBI)C11orf52
DMDM Disease mutations91894
Blocks (Seattle)C11orf52
SuperfamilyQ96A22
Human Protein Atlas [tissue]ENSG00000149300-C11orf52 [tissue]
Peptide AtlasQ96A22
HPRD14444
IPIIPI00059185   IPI00977022   
Protein Interaction databases
DIP (DOE-UCLA)Q96A22
IntAct (EBI)Q96A22
FunCoupENSG00000149300
BioGRIDC11orf52
STRING (EMBL)C11orf52
ZODIACC11orf52
Ontologies - Pathways
QuickGOQ96A22
Ontology : AmiGOextracellular exosome  
Ontology : EGO-EBIextracellular exosome  
NDEx NetworkC11orf52
Atlas of Cancer Signalling NetworkC11orf52
Wikipedia pathwaysC11orf52
Orthology - Evolution
OrthoDB91894
GeneTree (enSembl)ENSG00000149300
Phylogenetic Trees/Animal Genes : TreeFamC11orf52
HOVERGENQ96A22
HOGENOMQ96A22
Homologs : HomoloGeneC11orf52
Homology/Alignments : Family Browser (UCSC)C11orf52
Gene fusions - Rearrangements
Fusion: Tumor Portal C11orf52
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf52
dbVarC11orf52
ClinVarC11orf52
1000_GenomesC11orf52 
Exome Variant ServerC11orf52
ExAC (Exome Aggregation Consortium)ENSG00000149300
GNOMAD BrowserENSG00000149300
Genetic variants : HAPMAP91894
Genomic Variants (DGV)C11orf52 [DGVbeta]
DECIPHERC11orf52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf52 
MutationsICGC Data PortalC11orf52 
TCGA Data PortalC11orf52 
Broad Tumor PortalC11orf52
OASIS PortalC11orf52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf52
DgiDB (Drug Gene Interaction Database)C11orf52
DoCM (Curated mutations)C11orf52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf52 (select a term)
C11orf52
Cancer3DC11orf52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf52
Genetic Testing Registry C11orf52
NextProtQ96A22 [Medical]
TSGene91894
GENETestsC11orf52
Target ValidationC11orf52
Huge Navigator C11orf52 [HugePedia]
snp3D : Map Gene to Disease91894
BioCentury BCIQC11orf52
ClinGenC11orf52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91894
Chemical/Pharm GKB GenePA143485347
Clinical trialC11orf52
Miscellaneous
canSAR (ICR)C11orf52 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf52
EVEXC11orf52
GoPubMedC11orf52
iHOPC11orf52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:32 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.