Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf53 (chromosome 11 open reading frame 53)

Identity

Alias_symbol (synonym)MGC50104
Other alias-
HGNC (Hugo) C11orf53
LocusID (NCBI) 341032
Atlas_Id 60887
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111126707 and ends at 111157129 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf53   30527
Cards
Entrez_Gene (NCBI)C11orf53  341032  chromosome 11 open reading frame 53
Aliases
GeneCards (Weizmann)C11orf53
Ensembl hg19 (Hinxton)ENSG00000150750 [Gene_View]  chr11:111126707-111157129 [Contig_View]  C11orf53 [Vega]
Ensembl hg38 (Hinxton)ENSG00000150750 [Gene_View]  chr11:111126707-111157129 [Contig_View]  C11orf53 [Vega]
ICGC DataPortalENSG00000150750
TCGA cBioPortalC11orf53
AceView (NCBI)C11orf53
Genatlas (Paris)C11orf53
WikiGenes341032
SOURCE (Princeton)C11orf53
Genetics Home Reference (NIH)C11orf53
Genomic and cartography
GoldenPath hg19 (UCSC)C11orf53  -     chr11:111126707-111157129 +  11q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C11orf53  -     11q23.1   [Description]    (hg38-Dec_2013)
EnsemblC11orf53 - 11q23.1 [CytoView hg19]  C11orf53 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf53 [Mapview hg19]  C11orf53 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI864880 BC039669 HQ448578 HY297763
RefSeq transcript (Entrez)NM_198498
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)C11orf53
Cluster EST : UnigeneHs.298685 [ NCBI ]
CGAP (NCI)Hs.298685
Alternative Splicing GalleryENSG00000150750
Gene ExpressionC11orf53 [ NCBI-GEO ]   C11orf53 [ EBI - ARRAY_EXPRESS ]   C11orf53 [ SEEK ]   C11orf53 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf53 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341032
GTEX Portal (Tissue expression)C11orf53
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXP5
Splice isoforms : SwissVarQ8IXP5
PhosPhoSitePlusQ8IXP5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf53
DMDM Disease mutations341032
Blocks (Seattle)C11orf53
SuperfamilyQ8IXP5
Human Protein AtlasENSG00000150750
Peptide AtlasQ8IXP5
HPRD14663
IPIIPI00260451   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXP5
IntAct (EBI)Q8IXP5
FunCoupENSG00000150750
BioGRIDC11orf53
STRING (EMBL)C11orf53
ZODIACC11orf53
Ontologies - Pathways
QuickGOQ8IXP5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC11orf53
Atlas of Cancer Signalling NetworkC11orf53
Wikipedia pathwaysC11orf53
Orthology - Evolution
OrthoDB341032
GeneTree (enSembl)ENSG00000150750
Phylogenetic Trees/Animal Genes : TreeFamC11orf53
HOVERGENQ8IXP5
HOGENOMQ8IXP5
Homologs : HomoloGeneC11orf53
Homology/Alignments : Family Browser (UCSC)C11orf53
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf53 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf53
dbVarC11orf53
ClinVarC11orf53
1000_GenomesC11orf53 
Exome Variant ServerC11orf53
ExAC (Exome Aggregation Consortium)C11orf53 (select the gene name)
Genetic variants : HAPMAP341032
Genomic Variants (DGV)C11orf53 [DGVbeta]
DECIPHER (Syndromes)11:111126707-111157129  ENSG00000150750
CONAN: Copy Number AnalysisC11orf53 
Mutations
ICGC Data PortalC11orf53 
TCGA Data PortalC11orf53 
Broad Tumor PortalC11orf53
OASIS PortalC11orf53 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf53  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf53
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf53
DgiDB (Drug Gene Interaction Database)C11orf53
DoCM (Curated mutations)C11orf53 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf53 (select a term)
intoGenC11orf53
Cancer3DC11orf53(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC11orf53
Genetic Testing Registry C11orf53
NextProtQ8IXP5 [Medical]
TSGene341032
GENETestsC11orf53
Huge Navigator C11orf53 [HugePedia]
snp3D : Map Gene to Disease341032
BioCentury BCIQC11orf53
ClinGenC11orf53
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341032
Chemical/Pharm GKB GenePA143485348
Clinical trialC11orf53
Miscellaneous
canSAR (ICR)C11orf53 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf53
EVEXC11orf53
GoPubMedC11orf53
iHOPC11orf53
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:19 CET 2017

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