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C11orf54 (chromosome 11 open reading frame 54)

Identity

Alias (NCBI)PTD012
PTOD012
HGNC (Hugo) C11orf54
HGNC Alias symbPTD012
LocusID (NCBI) 28970
Atlas_Id 60888
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93741672 and ends at 93764749 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C11orf54 (11q21) / C11orf54 (11q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)C11orf54   30204
Cards
Entrez_Gene (NCBI)C11orf54    chromosome 11 open reading frame 54
AliasesPTD012; PTOD012
GeneCards (Weizmann)C11orf54
Ensembl hg19 (Hinxton)ENSG00000182919 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182919 [Gene_View]  ENSG00000182919 [Sequence]  chr11:93741672-93764749 [Contig_View]  C11orf54 [Vega]
ICGC DataPortalENSG00000182919
TCGA cBioPortalC11orf54
AceView (NCBI)C11orf54
Genatlas (Paris)C11orf54
SOURCE (Princeton)C11orf54
Genetics Home Reference (NIH)C11orf54
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf54  -     chr11:93741672-93764749 +  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf54  -     11q21   [Description]    (hg19-Feb_2009)
GoldenPathC11orf54 - 11q21 [CytoView hg19]  C11orf54 - 11q21 [CytoView hg38]
ImmunoBaseENSG00000182919
Genome Data Viewer NCBIC11orf54 [Mapview hg19]  
OMIM615810   
Gene and transcription
Genbank (Entrez)AA864999 AF092133 AK129932 AK225977 AK291833
RefSeq transcript (Entrez)NM_001286067 NM_001286068 NM_001286069 NM_001286070 NM_001286071 NM_001351985 NM_001351986 NM_001351987 NM_001351988 NM_001351989 NM_001351990 NM_001351991 NM_001351992 NM_001351993 NM_001369406 NM_014039
Consensus coding sequences : CCDS (NCBI)C11orf54
Gene ExpressionC11orf54 [ NCBI-GEO ]   C11orf54 [ EBI - ARRAY_EXPRESS ]   C11orf54 [ SEEK ]   C11orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf54 [ Firebrowse - Broad ]
GenevisibleExpression of C11orf54 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28970
GTEX Portal (Tissue expression)C11orf54
Human Protein AtlasENSG00000182919-C11orf54 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0W9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0W9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0W9
PhosPhoSitePlusQ9H0W9
Domains : Interpro (EBI)DUF1907   
Domain families : Pfam (Sanger)DUF1907 (PF08925)   
Domain families : Pfam (NCBI)pfam08925   
Domain families : Smart (EMBL)DUF1907 (SM01168)  
Conserved Domain (NCBI)C11orf54
PDB (RSDB)1XCR   
PDB Europe1XCR   
PDB (PDBSum)1XCR   
PDB (IMB)1XCR   
Structural Biology KnowledgeBase1XCR   
SCOP (Structural Classification of Proteins)1XCR   
CATH (Classification of proteins structures)1XCR   
SuperfamilyQ9H0W9
AlphaFold pdb e-kbQ9H0W9   
Human Protein Atlas [tissue]ENSG00000182919-C11orf54 [tissue]
HPRD17923
Protein Interaction databases
DIP (DOE-UCLA)Q9H0W9
IntAct (EBI)Q9H0W9
BioGRIDC11orf54
STRING (EMBL)C11orf54
ZODIACC11orf54
Ontologies - Pathways
QuickGOQ9H0W9
Ontology : AmiGOprotein binding  nucleus  nucleus  nucleoplasm  zinc ion binding  zinc ion binding  nuclear body  hydrolase activity, acting on ester bonds  hydrolase activity, acting on ester bonds  extracellular exosome  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  nucleoplasm  zinc ion binding  zinc ion binding  nuclear body  hydrolase activity, acting on ester bonds  hydrolase activity, acting on ester bonds  extracellular exosome  
NDEx NetworkC11orf54
Atlas of Cancer Signalling NetworkC11orf54
Wikipedia pathwaysC11orf54
Orthology - Evolution
OrthoDB28970
GeneTree (enSembl)ENSG00000182919
Phylogenetic Trees/Animal Genes : TreeFamC11orf54
Homologs : HomoloGeneC11orf54
Homology/Alignments : Family Browser (UCSC)C11orf54
Gene fusions - Rearrangements
Fusion : QuiverC11orf54
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf54
dbVarC11orf54
ClinVarC11orf54
MonarchC11orf54
1000_GenomesC11orf54 
Exome Variant ServerC11orf54
GNOMAD BrowserENSG00000182919
Varsome BrowserC11orf54
ACMGC11orf54 variants
VarityQ9H0W9
Genomic Variants (DGV)C11orf54 [DGVbeta]
DECIPHERC11orf54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf54 
Mutations
ICGC Data PortalC11orf54 
TCGA Data PortalC11orf54 
Broad Tumor PortalC11orf54
OASIS PortalC11orf54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf54  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC11orf54
Mutations and Diseases : HGMDC11orf54
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaC11orf54
DgiDB (Drug Gene Interaction Database)C11orf54
DoCM (Curated mutations)C11orf54
CIViC (Clinical Interpretations of Variants in Cancer)C11orf54
Cancer3DC11orf54
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615810   
Orphanet
DisGeNETC11orf54
MedgenC11orf54
Genetic Testing Registry C11orf54
NextProtQ9H0W9 [Medical]
GENETestsC11orf54
Target ValidationC11orf54
Huge Navigator C11orf54 [HugePedia]
ClinGenC11orf54
Clinical trials, drugs, therapy
MyCancerGenomeC11orf54
Protein Interactions : CTDC11orf54
Pharm GKB GenePA143485349
PharosQ9H0W9
Clinical trialC11orf54
Miscellaneous
canSAR (ICR)C11orf54
HarmonizomeC11orf54
DataMed IndexC11orf54
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC11orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:45 CEST 2021

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