Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf54 (chromosome 11 open reading frame 54)

Identity

Alias_symbol (synonym)PTD012
Other aliasPTOD012
HGNC (Hugo) C11orf54
LocusID (NCBI) 28970
Atlas_Id 60888
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93474760 and ends at 93496268 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C11orf54 (11q21) / C11orf54 (11q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf54   30204
Cards
Entrez_Gene (NCBI)C11orf54  28970  chromosome 11 open reading frame 54
AliasesPTD012; PTOD012
GeneCards (Weizmann)C11orf54
Ensembl hg19 (Hinxton)ENSG00000182919 [Gene_View]  chr11:93474760-93496268 [Contig_View]  C11orf54 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182919 [Gene_View]  chr11:93474760-93496268 [Contig_View]  C11orf54 [Vega]
ICGC DataPortalENSG00000182919
TCGA cBioPortalC11orf54
AceView (NCBI)C11orf54
Genatlas (Paris)C11orf54
WikiGenes28970
SOURCE (Princeton)C11orf54
Genetics Home Reference (NIH)C11orf54
Genomic and cartography
GoldenPath hg19 (UCSC)C11orf54  -     chr11:93474760-93496268 +  11q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C11orf54  -     11q21   [Description]    (hg38-Dec_2013)
EnsemblC11orf54 - 11q21 [CytoView hg19]  C11orf54 - 11q21 [CytoView hg38]
Mapping of homologs : NCBIC11orf54 [Mapview hg19]  C11orf54 [Mapview hg38]
OMIM615810   
Gene and transcription
Genbank (Entrez)AA864999 AF092133 AK129932 AK225977 AK291833
RefSeq transcript (Entrez)NM_001286067 NM_001286068 NM_001286069 NM_001286070 NM_001286071 NM_014039
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929380
Consensus coding sequences : CCDS (NCBI)C11orf54
Cluster EST : UnigeneHs.8360 [ NCBI ]
CGAP (NCI)Hs.8360
Alternative Splicing GalleryENSG00000182919
Gene ExpressionC11orf54 [ NCBI-GEO ]   C11orf54 [ EBI - ARRAY_EXPRESS ]   C11orf54 [ SEEK ]   C11orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28970
GTEX Portal (Tissue expression)C11orf54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0W9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0W9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0W9
Splice isoforms : SwissVarQ9H0W9
PhosPhoSitePlusQ9H0W9
Domains : Interpro (EBI)DUF1907   
Domain families : Pfam (Sanger)DUF1907 (PF08925)   
Domain families : Pfam (NCBI)pfam08925   
Conserved Domain (NCBI)C11orf54
DMDM Disease mutations28970
Blocks (Seattle)C11orf54
PDB (SRS)1XCR   
PDB (PDBSum)1XCR   
PDB (IMB)1XCR   
PDB (RSDB)1XCR   
Structural Biology KnowledgeBase1XCR   
SCOP (Structural Classification of Proteins)1XCR   
CATH (Classification of proteins structures)1XCR   
SuperfamilyQ9H0W9
Human Protein AtlasENSG00000182919
Peptide AtlasQ9H0W9
HPRD17923
IPIIPI00072044   IPI00761072   IPI00061507   IPI00760666   IPI00985388   IPI00977701   IPI00975776   IPI00977111   IPI00979593   IPI00981758   IPI00984827   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0W9
IntAct (EBI)Q9H0W9
FunCoupENSG00000182919
BioGRIDC11orf54
STRING (EMBL)C11orf54
ZODIACC11orf54
Ontologies - Pathways
QuickGOQ9H0W9
Ontology : AmiGOprotein binding  nucleus  metabolic process  metabolic process  zinc ion binding  hydrolase activity, acting on ester bonds  extracellular exosome  
Ontology : EGO-EBIprotein binding  nucleus  metabolic process  metabolic process  zinc ion binding  hydrolase activity, acting on ester bonds  extracellular exosome  
NDEx NetworkC11orf54
Atlas of Cancer Signalling NetworkC11orf54
Wikipedia pathwaysC11orf54
Orthology - Evolution
OrthoDB28970
GeneTree (enSembl)ENSG00000182919
Phylogenetic Trees/Animal Genes : TreeFamC11orf54
HOVERGENQ9H0W9
HOGENOMQ9H0W9
Homologs : HomoloGeneC11orf54
Homology/Alignments : Family Browser (UCSC)C11orf54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf54
dbVarC11orf54
ClinVarC11orf54
1000_GenomesC11orf54 
Exome Variant ServerC11orf54
ExAC (Exome Aggregation Consortium)C11orf54 (select the gene name)
Genetic variants : HAPMAP28970
Genomic Variants (DGV)C11orf54 [DGVbeta]
DECIPHER (Syndromes)11:93474760-93496268  ENSG00000182919
CONAN: Copy Number AnalysisC11orf54 
Mutations
ICGC Data PortalC11orf54 
TCGA Data PortalC11orf54 
Broad Tumor PortalC11orf54
OASIS PortalC11orf54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf54
DgiDB (Drug Gene Interaction Database)C11orf54
DoCM (Curated mutations)C11orf54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf54 (select a term)
intoGenC11orf54
Cancer3DC11orf54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615810   
Orphanet
MedgenC11orf54
Genetic Testing Registry C11orf54
NextProtQ9H0W9 [Medical]
TSGene28970
GENETestsC11orf54
Huge Navigator C11orf54 [HugePedia]
snp3D : Map Gene to Disease28970
BioCentury BCIQC11orf54
ClinGenC11orf54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28970
Chemical/Pharm GKB GenePA143485349
Clinical trialC11orf54
Miscellaneous
canSAR (ICR)C11orf54 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf54
EVEXC11orf54
GoPubMedC11orf54
iHOPC11orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:19 CET 2017

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