Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C11orf57 (chromosome 11 open reading frame 57)

Identity

Alias_symbol (synonym)FLJ10726
Other alias-
HGNC (Hugo) C11orf57
LocusID (NCBI) 55216
Atlas_Id 60889
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 112074244 and ends at 112085150 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C11orf57 (11q23.1) / C11orf57 (11q23.1)C11orf57 (11q23.1) / DLAT (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C11orf57   25569
Cards
Entrez_Gene (NCBI)C11orf57  55216  chromosome 11 open reading frame 57
Aliases
GeneCards (Weizmann)C11orf57
Ensembl hg19 (Hinxton)ENSG00000150776 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150776 [Gene_View]  chr11:112074244-112085150 [Contig_View]  C11orf57 [Vega]
ICGC DataPortalENSG00000150776
TCGA cBioPortalC11orf57
AceView (NCBI)C11orf57
Genatlas (Paris)C11orf57
WikiGenes55216
SOURCE (Princeton)C11orf57
Genetics Home Reference (NIH)C11orf57
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf57  -     chr11:112074244-112085150 +  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf57  -     11q23.1   [Description]    (hg19-Feb_2009)
EnsemblC11orf57 - 11q23.1 [CytoView hg19]  C11orf57 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBIC11orf57 [Mapview hg19]  C11orf57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096251 AK001588 AK094203 AK125340 BC005403
RefSeq transcript (Entrez)NM_001082969 NM_001082970 NM_001301017 NM_001301019 NM_001301021 NM_018195
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf57
Cluster EST : UnigeneHs.195060 [ NCBI ]
CGAP (NCI)Hs.195060
Alternative Splicing GalleryENSG00000150776
Gene ExpressionC11orf57 [ NCBI-GEO ]   C11orf57 [ EBI - ARRAY_EXPRESS ]   C11orf57 [ SEEK ]   C11orf57 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55216
GTEX Portal (Tissue expression)C11orf57
Human Protein AtlasENSG00000150776-C11orf57 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUT1
Splice isoforms : SwissVarQ6ZUT1
PhosPhoSitePlusQ6ZUT1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf57
DMDM Disease mutations55216
Blocks (Seattle)C11orf57
SuperfamilyQ6ZUT1
Human Protein Atlas [tissue]ENSG00000150776-C11orf57 [tissue]
Peptide AtlasQ6ZUT1
HPRD07695
IPIIPI00827642   IPI00827592   IPI00465189   IPI00018904   IPI00983431   IPI00976832   IPI00984599   IPI00977409   IPI00984127   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUT1
IntAct (EBI)Q6ZUT1
FunCoupENSG00000150776
BioGRIDC11orf57
STRING (EMBL)C11orf57
ZODIACC11orf57
Ontologies - Pathways
QuickGOQ6ZUT1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC11orf57
Atlas of Cancer Signalling NetworkC11orf57
Wikipedia pathwaysC11orf57
Orthology - Evolution
OrthoDB55216
GeneTree (enSembl)ENSG00000150776
Phylogenetic Trees/Animal Genes : TreeFamC11orf57
HOVERGENQ6ZUT1
HOGENOMQ6ZUT1
Homologs : HomoloGeneC11orf57
Homology/Alignments : Family Browser (UCSC)C11orf57
Gene fusions - Rearrangements
Tumor Fusion PortalC11orf57
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC11orf57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C11orf57
dbVarC11orf57
ClinVarC11orf57
1000_GenomesC11orf57 
Exome Variant ServerC11orf57
ExAC (Exome Aggregation Consortium)ENSG00000150776
GNOMAD BrowserENSG00000150776
Genetic variants : HAPMAP55216
Genomic Variants (DGV)C11orf57 [DGVbeta]
DECIPHERC11orf57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC11orf57 
Mutations
ICGC Data PortalC11orf57 
TCGA Data PortalC11orf57 
Broad Tumor PortalC11orf57
OASIS PortalC11orf57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC11orf57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC11orf57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C11orf57
DgiDB (Drug Gene Interaction Database)C11orf57
DoCM (Curated mutations)C11orf57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C11orf57 (select a term)
intoGenC11orf57
Cancer3DC11orf57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC11orf57
MedgenC11orf57
Genetic Testing Registry C11orf57
NextProtQ6ZUT1 [Medical]
TSGene55216
GENETestsC11orf57
Target ValidationC11orf57
Huge Navigator C11orf57 [HugePedia]
snp3D : Map Gene to Disease55216
BioCentury BCIQC11orf57
ClinGenC11orf57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55216
Chemical/Pharm GKB GenePA143485352
Clinical trialC11orf57
Miscellaneous
canSAR (ICR)C11orf57 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf57
EVEXC11orf57
GoPubMedC11orf57
iHOPC11orf57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:44:39 CET 2017

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